Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58340 558 / 0 BCD1, ZRZ, ZF14 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) AT4G29140 458 / 2e-156 ADS1 ACTIVATED DISEASE SUSCEPTIBILITY 1, MATE efflux family protein (.1) AT4G23030 455 / 6e-156 MATE efflux family protein (.1) AT5G19700 447 / 2e-152 MATE efflux family protein (.1) AT5G52050 406 / 1e-136 MATE efflux family protein (.1) AT2G38510 392 / 3e-131 MATE efflux family protein (.1) AT1G71870 370 / 1e-122 MATE efflux family protein (.1) AT5G49130 360 / 1e-118 MATE efflux family protein (.1) AT4G22790 236 / 3e-71 MATE efflux family protein (.1) AT1G71140 228 / 4e-68 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028230 [exp] 758 / 0 AT1G58340 567 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Lus10017836 [exp] 505 / 3e-175 AT4G23030 608 / 0.0 MATE efflux family protein (.1) Lus10027417 [exp] 487 / 2e-167 AT4G23030 601 / 0.0 MATE efflux family protein (.1) Lus10012944 [exp] 452 / 3e-154 AT4G29140 639 / 0.0 ACTIVATED DISEASE SUSCEPTIBILITY 1, MATE efflux family protein (.1) Lus10009788 [exp] 367 / 1e-121 AT5G49130 627 / 0.0 MATE efflux family protein (.1) Lus10025237 [exp] 355 / 4e-116 AT2G38510 640 / 0.0 MATE efflux family protein (.1) Lus10025156 [exp] 289 / 3e-92 AT2G38510 568 / 0.0 MATE efflux family protein (.1) Lus10007006 [exp] 248 / 2e-75 AT4G22790 549 / 0.0 MATE efflux family protein (.1) Lus10001318 [exp] 224 / 1e-66 AT5G52450 507 / 1e-177 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G107200 [exp] 630 / 0 AT1G58340 600 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Potri.015G135600 [exp] 509 / 2e-176 AT4G23030 576 / 0.0 MATE efflux family protein (.1) Potri.003G121400 [exp] 499 / 1e-172 AT4G23030 635 / 0.0 MATE efflux family protein (.1) Potri.012G133500 [exp] 499 / 3e-172 AT4G23030 578 / 0.0 MATE efflux family protein (.1) Potri.007G043100 [exp] 459 / 5e-157 AT1G58340 475 / 8e-164 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Potri.013G115600 [exp] 398 / 1e-133 AT1G71870 637 / 0.0 MATE efflux family protein (.1) Potri.016G134800 [exp] 392 / 2e-130 AT2G38510 597 / 0.0 MATE efflux family protein (.1) Potri.019G086100 [exp] 388 / 1e-129 AT1G71870 654 / 0.0 MATE efflux family protein (.1) Potri.010G011400 [exp] 380 / 1e-126 AT5G49130 611 / 0.0 MATE efflux family protein (.1) Potri.001G115400 [exp] 281 / 5e-88 AT4G22790 487 / 3e-169 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10007231 pacid=23182162 polypeptide=Lus10007231 locus=Lus10007231.g ID=Lus10007231.BGIv1.0 annot-version=v1.0 ATGTGTAATCCTAAATCATCCTCTCCACCTTCATTGATCCATGCCTCACCCAACCCAACCCATGATCTCCCCAAACCCAAATCTAATTACGACTACGACA AACAACAATATGAGCAAGATCAACAGAAACTCCATAAATGGCCAACTCCTTCCGAGGCCATGGAGGAAATAAAAGCGTTAGGGAGAATCTCAGGACCAAC GGCGATAACCGGACTGATCCTCTACTCAAGAGCCATGATCTCCATGCTCTTCCTTGGGTACCTCGGTGAGATGGAACTCGCCGGCGGCTCACTATCCATC GGCTTCGCCAACATAACCGGCTACTCCGTAATATCCGGACTCGCCATGGGTATGGAGCCAATCTGCGGCCAAGCCTACGGAGCCAAGCAGATGAAGCTCC TTGGTCTAACCCTCCAACGAACGGTCCTCCTCCTCCTCACAGCCTCCCTCCCCATCTCCCTCGCCTGGCTCAACATCGAGTCCATCCTCATCCGTTGCGG CCAGGACAAATCGATCTCCGCGGCCGCCGCTACCTTCACCCTTTTCTCCATCCCTGACCTTTTCCTCCTCTCCGTCCTCCATCCTCTCCGCATCTACCTC CGCACCCAGGGCGTCACTTTCCCTCTGGCGGCCTGCTCGGCCGCCTCCGTCCTCCTCCACCTCCCGCTCAACTACCTCTTCGTCTTCCACTTCAAACTGG GAATCTCCGGCGTGGCGGCGGCGGCGGTTCTCACAAACCTCAACCTCATCGTTTTATTAATCTCCTTCGTTTACGTCTCGGGAGTTTATAAGGAGTCATG GGTTCAACCAGGGGTTGAGTGTTTAAAAGGGTGGGGACCACTATTGCAACTTGCGGTCCCCACGTGCGTGTCTGTCTGTTTGGAATGGTGGTGGTATGAA CTCATGATCATCCTTTGCGGCTTGCTCCCCAACCCTAAATCCACCGTGGCGTCCATGGGCATCCTCATCCAGACGACGTCGTTGGTTTACGTCTTCCCTT CCTCGCTCGGACTCGGCGTGTCCACCCGGGTGGGTAACGAGCTGGGCGCTAACCGACCCGGTCGTGCGCGGTTTTCCGCTATCGTGTCCATGGTTGTTGC GGCGGTGTTGGGTGTGGCCGCGATGGGGTTTGCCACCGGGATGAGATCCCGGTGGGGCCGGTTGTTCACATCAGATTCCGAGATTCTGAAGCTGACCTCG CTCGCACTGCCCATTGTTGGGTTGTGCGAGCTGGGTAACTGTCCGCAGACAACAGGGTGCGGTGTGTTGAGAGGGAGCGCTCGGCCTACAGTCGGGGCGA ATATTAATTTGGGGTCGTTTTATCTGGTGGGAATGCCGGTCGCTGTTTGGCTCGGGTTCAGAGCGGGTTTTGGGTTCGTCGGGTTATGGTTCGGGCTGCT TGCCGCGCAAGGATCGTGTGCCATCCTGATGCTCATAGTTCTGTGGCGGACGGATTGGATGGTCCAGGTTGAAAGATCAAGGGACCTCACCAGATGTAGC AGTACTAATGCTGCTGCTGATCCTGTGTTGCCCATATCAGTGGAAGGGAGGAAGACGAACAAGGAGGAGGGAAATGTTAACAAGATGATTTTGTGCATAA GGGATCATCACCAAGATAATAATATGCTAGAGAGTGAACCATTGATTATTTCCAACAGCGGCGGCGAGAATGCGCAACGATAA
AA sequence Show only first row Show all	>Lus10007231 pacid=23182162 polypeptide=Lus10007231 locus=Lus10007231.g ID=Lus10007231.BGIv1.0 annot-version=v1.0 MCNPKSSSPPSLIHASPNPTHDLPKPKSNYDYDKQQYEQDQQKLHKWPTPSEAMEEIKALGRISGPTAITGLILYSRAMISMLFLGYLGEMELAGGSLSI GFANITGYSVISGLAMGMEPICGQAYGAKQMKLLGLTLQRTVLLLLTASLPISLAWLNIESILIRCGQDKSISAAAATFTLFSIPDLFLLSVLHPLRIYL RTQGVTFPLAACSAASVLLHLPLNYLFVFHFKLGISGVAAAAVLTNLNLIVLLISFVYVSGVYKESWVQPGVECLKGWGPLLQLAVPTCVSVCLEWWWYE LMIILCGLLPNPKSTVASMGILIQTTSLVYVFPSSLGLGVSTRVGNELGANRPGRARFSAIVSMVVAAVLGVAAMGFATGMRSRWGRLFTSDSEILKLTS LALPIVGLCELGNCPQTTGCGVLRGSARPTVGANINLGSFYLVGMPVAVWLGFRAGFGFVGLWFGLLAAQGSCAILMLIVLWRTDWMVQVERSRDLTRCS STNAAADPVLPISVEGRKTNKEEGNVNKMILCIRDHHQDNNMLESEPLIISNSGGENAQR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G58340		BCD1, ZRZ, ZF14	ZRIZI, BUSH-AND-CHLOROTIC-DWAR...		Lus10007231 [exp]	0	1
AT5G59730		ATEXO70H7	exocyst subunit exo70 family p...		Lus10040872 [exp]	1.4	0.9241
					Lus10011342 [exp]	1.7	0.9210
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10014821 [exp]	1.7	0.9281
AT2G22790			unknown protein		Lus10011575 [exp]	2.8	0.9084
					Lus10003132 [exp]	4.9	0.9105
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10036112 [exp]	6.9	0.9177
AT5G05280			RING/U-box superfamily protein...		Lus10034228 [exp]	7.3	0.9055
AT5G39950		ATTRXH2, ATTRX2...	Arabidopsis thioredoxin h2, th...		Lus10036695 [exp]	7.7	0.8881
AT3G19970			alpha/beta-Hydrolases superfam...		Lus10010171 [exp]	7.9	0.8870
AT1G52700			alpha/beta-Hydrolases superfam...		Lus10026054 [exp]	7.9	0.8565

Compare expression of checked genes

Lus10007231 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.