Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09970 1157 / 0 RLK7, LRRXI-23 ,LRR XI-23 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G19700 920 / 0 IKU2 HAIKU2, Leucine-rich repeat protein kinase family protein (.1) AT1G28440 675 / 0 HSL1 HAESA-like 1 (.1) AT5G49660 670 / 0 XIP1 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G72180 617 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT5G65710 608 / 0 HSL2 HAESA-like 2 (.1) AT4G28490 594 / 0 RLK5, HAESA RECEPTOR-LIKE PROTEIN KINASE 5, HAESA, Leucine-rich receptor-like protein kinase family protein (.1) AT5G25930 570 / 0 Protein kinase family protein with leucine-rich repeat domain (.1) AT5G65700 565 / 0 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G49670 559 / 0 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028232 [exp] 1781 / 0 AT1G09970 1181 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10020500 [exp] 732 / 0 AT1G09970 755 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10009476 [exp] 672 / 0 AT1G72180 995 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10013968 [exp] 649 / 0 AT1G28440 1372 / 0.0 HAESA-like 1 (.1) Lus10015393 [exp] 649 / 0 AT1G28440 1372 / 0.0 HAESA-like 1 (.1) Lus10018636 [exp] 648 / 0 AT1G28440 1203 / 0.0 HAESA-like 1 (.1) Lus10007233 [exp] 646 / 0 AT5G49660 1224 / 0.0 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10028234 [exp] 642 / 0 AT5G49660 1234 / 0.0 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10019248 [exp] 579 / 0 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G106800 [exp] 1309 / 0 AT1G09970 1204 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.009G081800 [exp] 1064 / 0 AT1G09970 1033 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.004G049100 [exp] 682 / 0 AT1G28440 1387 / 0.0 HAESA-like 1 (.1) Potri.002G111700 [exp] 681 / 0 AT5G49660 1229 / 0.0 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.011G058100 [exp] 675 / 0 AT1G28440 1309 / 0.0 HAESA-like 1 (.1) Potri.019G078400 [exp] 665 / 0 AT1G72180 1060 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.007G135400 [exp] 645 / 0 AT1G28440 1109 / 0.0 HAESA-like 1 (.1) Potri.017G016600 [exp] 639 / 0 AT1G28440 1130 / 0.0 HAESA-like 1 (.1) Potri.006G235800 [exp] 587 / 0 AT5G25930 1074 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.007G009200 [exp] 574 / 0 AT5G65700 1530 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10007232 pacid=23182161 polypeptide=Lus10007232 locus=Lus10007232.g ID=Lus10007232.BGIv1.0 annot-version=v1.0 ATGTCGATAACCACCACCGCCACCTTCCTCCTCTTCTGTTTCCTCTTCTTATCATCTCCCGTCCATTCCGACGACCTCCAACTCCTCCTCACCTTAAAAT CCTCCTTTCAAAACCCAAACACTCTCGTTTTCGACTCCTGGACTTCCTCCAACTCCCCCTGCAACTTCACCGGAATCACCTGCTCCCAAAATTCTGTCAC CGAGATTAATCTCTCTGCCTCCAATTTACAGGGCTCCCTCCCTCTCGACTCCATCTGCCAGCTCGATAACTTGGATAAGCTCTCCCTCAGCCGGAATTCA CTGACCGGAGTTGTCTCTAAGGATTTGAACAGCTGCACCAATCTCCGTTACCTCGATTTAGCCAATAATTTCTTCACAGGACAGTTCCCTGACATCTCTG CTCTTTCTCACCTCCAGCATCTCTACTTGAACCAAAGCGGATTCAGCGGCGTATTCCCATGGAAATCTCTTGCAAACGAACTCCTCACGCTTAGCTTGGG AGACAACTCCTTCGATCCTACGCCGTTTCCGATTGAGATCCTTCAGTTGACCAAGCTTCAGTGGATTTACTTGACCAATACCAGCCTTGAAGGGACAATT CCAGAAGCAATCGGTGGCCTCACCAACCTTGTTAACTTGGAGCTCTCGGAGAATCACCTCACTGGAGAAATTCCGTCTTCGATTGGGAATCTAAAGAATC TCTGGCAGTTTGAGATTTATGATAACAATCTGACGGGAGAATTACCGGCAGGAATCCGGAACTTAACCCGGTTGGAGAATTTCGATGCATCCAGGAATCA TCTCAAGGGGAACTTGTCGTATGTTAAGTACTTGACTAATCTCGTCACCCTCCAAATGTTTCAGAACGAGTTTTCGGGAGAAATCCCGCCGGAGTTGGGC CAATTTCAGAAGCTCGTCAACCTTTCCTTGTACGAGAATCAGCTCACCGGTCCATTGCCGCAAGATATTGGCTCTCTGTCGAATTTTGATTTCATCGACG TTTCCGAGAATTACCTGACCGGTCCAATTCCACCAAACATGTGCAATAAAGGGAAGATGAGGGGAGTTCTGATGCTCCAGAACAACTTCTCCGGCGGTAT CCCGACGAGTTATGGCGACTGCAAGACCCTCCTGAGATTCAGGGTGAGCAAGAATTCCCTCTCTGGCCAAGTCCCTCCTGGAATTTGGGGTTTGCCTAAC GTCAACATCATAGACATCGAGAACAATCAGCTGGAAGGTTCGTTGACCGCCGACATCGGAGAGGCGAAATCGCTAGGACAGCTTTTCGTAAGCAACAACC GTCTCTCCGGGGATCTGCCAGAGGAGATTTCTCAGGCCAAGTCGCTGGTTTCAATTTCATTGAGCGGCAATCAGTTTTCTGGGAAAATTCCTGAGAGTAT TGGAGGATTGAAGCTGCTGAGCAGTCTTCAAATGCAGAACAATCAGCTCACCGGTCCAATTCCAGAATCTTTAGGCATCTGCAATTCTCTCAGCGATATA AACATGGCTCAAAATTCCCTCTCCGGCCAGATTCCGACCTCGCTGGGATCTCTACCGACTCTAAACTCTCTAAACCTAACAGACAACAAGCTGTCAGGCC GAATTCCAGCCACCTTGTCGTCGTTGAAATTGAGCCTTCTGGATCTATCAAATAACAGATTAACAGGTCTTATCCCTGTTTCTCTTTCAATCGATGCGTA CAACGGAAGCTTCGATGGAAACCCTGGGCTCTGCAGTGAAACGGTCAACGGATTCGAACGGTGCCATCCTGCATCAGGAATGAGCAAAGACGTTCGAACC CTTTTGACCTGTTTGGCTGTCGGGTCATTGATATTGCTCGTTTCGTTTGGATGTTACTTACATTTGAAGAAGAGAGAAAAGGAAGAAGATCGATCGTTGA AAGGAGAGAATTGGGATGTGAAATCATTCCACGTTTTGACGTTCAGCGAGGACGACATTGTGGAGTCAATTAAGCAAGAGAATATCATCGGGAAAGGAGG ATCAGGTAGTGTTTACAAGGCCACTCTTGCCAACGGCAGAGATGTAGCAGTGAAACATATATGGACCGCCACCACTCAAGATGGCAAGCACAATTGGAGC ACGACACCGATGCTTGGTAAGCGAGGCGACGGTGGTGGGGGACGGAGGTCAAAGGAACTTGATGCGGAGGTCCAGACGTTGAGTTCGATTAGGCATGTGA ATGTGGTGAAGCTTTATTGCTGCATAACCAGCGAGGATTCGAGTCTGTTGGTGTACGAGTACATGTCGAATGGCAGCCTTTGGGACCGGCTCCACGCGTC TCAGAAGGTGGAGCTCGATTGGGACACGAGGTACGAGATAGCTGTTGGTGCAGCGAAAGGGTTGGAGTACCTACACCATGGATGTGAGAGGCCTGTGATT CATAGGGATGTCAAGTGCAGTAACATTTTGTTGGACGAGTTTTTCAAGCCGAGGATTGCTGATTTTGGACTGGCTAAGATTGTTCAATCCAGTTCGGGCA AGGATTCCACCCGGGTCATTGCTGGAACTCATGGATACATAGCCCCTGAATATGCATACACATACAAAGTGGACGAGAAGAGCGATGTGTATAGCTTCGG GGTGGTGTTGATGGAGCTGGTGAGCGGGAAGAGGCCGATAGAGCCCGAGTTCGGAGAGAACAAAGACATAGTAGATTGGATAAGCAGCAAGTTAAAGACT AAGGAAAGTGTTTTCAGCATTGTGGACTCGAGAATACCAGATGTCTACAGAGAAGATACGATTAAGGTGCTGAGGATTGCAATCCTCTGCACAGCAAAGC TGCCGAATTTGAGGCAAACAATGAGACGCGTGTTGCAAATGCTAGAAGAGGCCAAGCCATGTCAACTGCTGGGAATCATCATTAGCAAAGATGAAAAGAA TTCGTCGGGGAGAAAGTCAACTGCAGAACATTAA
AA sequence Show only first row Show all	>Lus10007232 pacid=23182161 polypeptide=Lus10007232 locus=Lus10007232.g ID=Lus10007232.BGIv1.0 annot-version=v1.0 MSITTTATFLLFCFLFLSSPVHSDDLQLLLTLKSSFQNPNTLVFDSWTSSNSPCNFTGITCSQNSVTEINLSASNLQGSLPLDSICQLDNLDKLSLSRNS LTGVVSKDLNSCTNLRYLDLANNFFTGQFPDISALSHLQHLYLNQSGFSGVFPWKSLANELLTLSLGDNSFDPTPFPIEILQLTKLQWIYLTNTSLEGTI PEAIGGLTNLVNLELSENHLTGEIPSSIGNLKNLWQFEIYDNNLTGELPAGIRNLTRLENFDASRNHLKGNLSYVKYLTNLVTLQMFQNEFSGEIPPELG QFQKLVNLSLYENQLTGPLPQDIGSLSNFDFIDVSENYLTGPIPPNMCNKGKMRGVLMLQNNFSGGIPTSYGDCKTLLRFRVSKNSLSGQVPPGIWGLPN VNIIDIENNQLEGSLTADIGEAKSLGQLFVSNNRLSGDLPEEISQAKSLVSISLSGNQFSGKIPESIGGLKLLSSLQMQNNQLTGPIPESLGICNSLSDI NMAQNSLSGQIPTSLGSLPTLNSLNLTDNKLSGRIPATLSSLKLSLLDLSNNRLTGLIPVSLSIDAYNGSFDGNPGLCSETVNGFERCHPASGMSKDVRT LLTCLAVGSLILLVSFGCYLHLKKREKEEDRSLKGENWDVKSFHVLTFSEDDIVESIKQENIIGKGGSGSVYKATLANGRDVAVKHIWTATTQDGKHNWS TTPMLGKRGDGGGGRRSKELDAEVQTLSSIRHVNVVKLYCCITSEDSSLLVYEYMSNGSLWDRLHASQKVELDWDTRYEIAVGAAKGLEYLHHGCERPVI HRDVKCSNILLDEFFKPRIADFGLAKIVQSSSGKDSTRVIAGTHGYIAPEYAYTYKVDEKSDVYSFGVVLMELVSGKRPIEPEFGENKDIVDWISSKLKT KESVFSIVDSRIPDVYREDTIKVLRIAILCTAKLPNLRQTMRRVLQMLEEAKPCQLLGIIISKDEKNSSGRKSTAEH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09970		RLK7, LRRXI-23 ...	receptor-like kinase 7, Leucin...		Lus10007232 [exp]	0	1
AT1G09970		RLK7, LRRXI-23 ...	receptor-like kinase 7, Leucin...		Lus10028232 [exp]	1.4	0.8025
AT2G01980		ATSOS1, SOS1, A...	ARABIDOPSIS SALT OVERLY SENSIT...		Lus10013798 [exp]	3.5	0.7837
AT4G36190			Serine carboxypeptidase S28 fa...		Lus10041817 [exp]	4.1	0.8174
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Lus10007833 [exp]	6.0	0.7328
AT1G64610			Transducin/WD40 repeat-like su...		Lus10017312 [exp]	9.6	0.8002
AT1G61660	bHLH	bHLH112	basic helix-loop-helix (bHLH) ...		Lus10007613 [exp]	14.5	0.7698
AT3G09920		PIP5K9	phosphatidyl inositol monophos...		Lus10023909 [exp]	18.1	0.7627
AT1G48040			Protein phosphatase 2C family ...		Lus10037832 [exp]	18.5	0.7648
AT2G01818			PLATZ transcription factor fam...		Lus10003680 [exp]	21.9	0.7463
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10005420 [exp]	33.4	0.7381

Compare expression of checked genes

Lus10007232 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.