Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49660 1111 / 0 XIP1 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G09970 621 / 0 RLK7, LRRXI-23 ,LRR XI-23 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) AT1G28440 553 / 0 HSL1 HAESA-like 1 (.1) AT4G28490 524 / 1e-170 RLK5, HAESA RECEPTOR-LIKE PROTEIN KINASE 5, HAESA, Leucine-rich receptor-like protein kinase family protein (.1) AT1G72180 520 / 3e-169 Leucine-rich receptor-like protein kinase family protein (.1) AT3G19700 520 / 4e-169 IKU2 HAIKU2, Leucine-rich repeat protein kinase family protein (.1) AT5G65710 490 / 9e-158 HSL2 HAESA-like 2 (.1) AT4G28650 479 / 3e-153 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT3G49670 475 / 6e-152 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 468 / 2e-149 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028234 [exp] 1716 / 0 AT5G49660 1234 / 0.0 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10028232 [exp] 598 / 0 AT1G09970 1181 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10007232 [exp] 597 / 0 AT1G09970 1186 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10015393 [exp] 544 / 4e-178 AT1G28440 1372 / 0.0 HAESA-like 1 (.1) Lus10013968 [exp] 540 / 1e-176 AT1G28440 1372 / 0.0 HAESA-like 1 (.1) Lus10009476 [exp] 527 / 7e-172 AT1G72180 995 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10018636 [exp] 515 / 4e-167 AT1G28440 1203 / 0.0 HAESA-like 1 (.1) Lus10027221 [exp] 485 / 2e-155 AT5G61480 1263 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Lus10013562 [exp] 479 / 2e-153 AT1G75820 1297 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G111700 [exp] 1330 / 0 AT5G49660 1229 / 0.0 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.002G106800 [exp] 646 / 0 AT1G09970 1204 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.009G081800 [exp] 588 / 0 AT1G09970 1033 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.019G078400 [exp] 564 / 0 AT1G72180 1060 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.011G058100 [exp] 559 / 0 AT1G28440 1309 / 0.0 HAESA-like 1 (.1) Potri.004G049100 [exp] 554 / 0 AT1G28440 1387 / 0.0 HAESA-like 1 (.1) Potri.007G135400 [exp] 528 / 8e-172 AT1G28440 1109 / 0.0 HAESA-like 1 (.1) Potri.017G016600 [exp] 524 / 9e-171 AT1G28440 1130 / 0.0 HAESA-like 1 (.1) Potri.003G107600 [exp] 498 / 3e-160 AT5G61480 1259 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Potri.001G126100 [exp] 488 / 1e-156 AT5G61480 1258 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10007233 pacid=23182155 polypeptide=Lus10007233 locus=Lus10007233.g ID=Lus10007233.BGIv1.0 annot-version=v1.0 ATGGCACTCCGCCTGCTGATTTCCTTACTGTATGTCCTACTTTTTGCTCTTACTTCTCCTCTGCAAGCAATCAGCAATAACCAGTCTGAGTTCTTCAGTC TTCTCAAGACTTCCCTGACCGGAAGTGGTTTGCCTGACTGGGATGTGGACGGTGGGAAGCCTTTCTGCAACTTCACTGGTATTACCTGCAACCCACAAGG TTATGTTGAAGAATTTGACATATCATGGAGGCGAATCTATGTTCGTTTCCCTGCTGGAATTTGCTCCTACCTCCCACAATTGCGAGTTATCCGGCTTGGA CACAACCATCTCCATGATAGTGACTTCCTCGGCAGCGTCGTCAACAACTGCTCTTTCCTTGAAGAATTGGACATGGGTGCTCTGTTTCTGATAGGAAAGC TACCAGATTTCTCTCCACTAAGACATCTAAAGGTGCTTAACATGTCTTACAACTTCTTCACAGGCGAATTCCCACTTTCGGTCACCAATCTCACGAATCT TGAGATGTTGGATTTCAACGAGAATACCCACCTTGACTCGTGGCAACTTCCCGAGAGCTTAACCAGACTGACAAAGCTCAAAACCATGATCTTGACTACA TGTGCGGTGCGTGGTCAAATCCCAGCATGGTTAGGGAACATGACTTCTCTTGTCGATCTTGAGCTAAGTGGGAATTTCCTGACCGGAAGGATTCCTGGAG AGCTTGGTTTGCTGAAGAATCTCAAGTCACTTGAGCTCTACTACAACTATGAGCTTTCTGGCAACATACCTGAGGAACTTGGCAACTTGACAGAGCTCAT AGACTTGGACATGTCAGTGAACAAGTTAACAGGGAACCTCCCGGAATCTATATGCCGCCTTCCAAAGCTTGAAGTACTTCAGCTGTACAATAACAGTCTC ACTGGAGAAATTCCAATTTCTATTGCTGAGTCACCATCACTGCGCATATTGTCATTATATGGCAACACTTTCACAGGCGAGGTTCCACGAGGCCTTGGGA AGCACTCTCATATGATTGTTCTAGATTTGTCAGAGAATCGCCTTTCGGGTCCTTTGCCGGCAGAGGTTTGCCAGGGAGGTAAACTAATGTACTACCTTGT CTTGGATAACATGTTTTCAGGAGAGTTGCCACATAGTTTGGTACAATGCAAGTCTCTGTTAAGGTTCCGAGTCAGTCACAACCGTCTCGAGGGTTCAATA CCTCAAGGTCTTCTGGGTCTTCCCCATGCTTCCATCATTGATTTGGGTTTCAATAACTTTAGTGGTTCGATTGACAAATCAATTGCAATGGGCAGAAATT TGTCTGAACTCTTCATGCAGAGCAACAAGATTTCAGGAGTCCTACCTCCTGAGATCTCAGGTGCTATCAATCTGGTTAAGATTGATCTCAGCAATAATCT CATCTTGGGGCCGATTCCTGTTCAGATTGGAAACCTCAGGAAGCTTAATTTGCTGATGCTGCAAGGCAACAAGCTGGATTCATCTATTCCCAACTCACTT TCTTTCCTGAAATCTCTTAACGTCCTTGATCTTTCAAACAACCTTTTGACTGGAAGTATCCCTGAGAGTGTCAGTGAACTGTTACCAAACTCTATTGATT TTTCAAACAATAATCTTTCTGGTCCCATCCCACTCATACTGATAAAAGAAGGGACGGTGGAGAGCTTCTCAGGGAATCCTGGCCTTTGTGTTCCAGTTCC AGTTACTTCATCCAAACAAATATTCCCCATTTGCTTGCAAAGAAACTACCGGAAGAAGCACAACTCCGTCTGGGCAATCAGCATCTCTGTATTGATCATA GTGGTCGGAATTCTGCTGCTTCTAAAACGTCGATGCGGTAGAGAAAGGGCAGTGATGGAGCCCGATGAGACTGTGTCTACTTCATTCTTTTCATATGATG TGAAGAGCTTCCACCGAATAAGTTTCGACCAGAGAGAGATCCTTGAAGCTTTGGTTGATAAGAACATAGTGGGGCATGGTGGTTCTGGCACAGTGTACAA GATTGACTTAAGCAGTGGTGAAGTCAGTGGTGAAGTTGTGGCCGTGAAGAGACTGTGGAGCAAGAGAAGCAAAGATTCTGCAGCAGATGTTCAGTTGCTT CTGGACAAGGAATTGAAGACTGAGGTTGAGACTCTGGGAAATATAAGGCATAAAAACATAGTCAAGCTTTACTGTTACTTCTCCAGCTTGGACGTCAACT TGCTGGTTTATGAGTACATGCCAAATGGAAATCTATGGGATGCACTTCATAAAGGTTGGACTCATCTGAATTGGCCTACCCGCCATCAAATAGCACTCGG GGTTGCTCAGGGCCTAGCATACCTGCATCATGACCTGTTGCCACCTATCATCCACCGCGACATCAAGTCAAGCAACATACTTTTGGATATTAACAACCAT CCAAAGGTGGCAGATTTCGGGATAGCAAAGGTTTTGCAAGCTAGAGGAGGAAAAGATTCCACAACGACTCTTATTGCAGGCACCTACGGTTACTTGGCCC CAGAATATGCATTCTCATCAAAGGCAACAACTAAGTGCGACGTGTACAGCTTCGGGGTTGTGCTGCTGGAACTAATAACTGGGAGGAAGCCTGTAGAAGC AGACTTTGGAGACAACAAGAACATCATTTACTGGGTTTCAACGAAAGTGGAAACCAAGGAAGGAGTCATGGAGGTCTTAGACAAAAAACTATTGGGTTCT TTCAGGGATGAGATGATCCAAGTCCTCAGAATTGCAATCCGATGCACCTACAAGAATCCAGCTCTAAGGCCAACCATGAGTGAGGTTGTCCAACTGTTGA TTGAGGCAGATCCTTGCAGATGCAAGTCGTCAAACAAGGCCAAGGATGCATCAAGTGTAACCAAGATAAAAAACCCATTTGACTTGTGA
AA sequence Show only first row Show all	>Lus10007233 pacid=23182155 polypeptide=Lus10007233 locus=Lus10007233.g ID=Lus10007233.BGIv1.0 annot-version=v1.0 MALRLLISLLYVLLFALTSPLQAISNNQSEFFSLLKTSLTGSGLPDWDVDGGKPFCNFTGITCNPQGYVEEFDISWRRIYVRFPAGICSYLPQLRVIRLG HNHLHDSDFLGSVVNNCSFLEELDMGALFLIGKLPDFSPLRHLKVLNMSYNFFTGEFPLSVTNLTNLEMLDFNENTHLDSWQLPESLTRLTKLKTMILTT CAVRGQIPAWLGNMTSLVDLELSGNFLTGRIPGELGLLKNLKSLELYYNYELSGNIPEELGNLTELIDLDMSVNKLTGNLPESICRLPKLEVLQLYNNSL TGEIPISIAESPSLRILSLYGNTFTGEVPRGLGKHSHMIVLDLSENRLSGPLPAEVCQGGKLMYYLVLDNMFSGELPHSLVQCKSLLRFRVSHNRLEGSI PQGLLGLPHASIIDLGFNNFSGSIDKSIAMGRNLSELFMQSNKISGVLPPEISGAINLVKIDLSNNLILGPIPVQIGNLRKLNLLMLQGNKLDSSIPNSL SFLKSLNVLDLSNNLLTGSIPESVSELLPNSIDFSNNNLSGPIPLILIKEGTVESFSGNPGLCVPVPVTSSKQIFPICLQRNYRKKHNSVWAISISVLII VVGILLLLKRRCGRERAVMEPDETVSTSFFSYDVKSFHRISFDQREILEALVDKNIVGHGGSGTVYKIDLSSGEVSGEVVAVKRLWSKRSKDSAADVQLL LDKELKTEVETLGNIRHKNIVKLYCYFSSLDVNLLVYEYMPNGNLWDALHKGWTHLNWPTRHQIALGVAQGLAYLHHDLLPPIIHRDIKSSNILLDINNH PKVADFGIAKVLQARGGKDSTTTLIAGTYGYLAPEYAFSSKATTKCDVYSFGVVLLELITGRKPVEADFGDNKNIIYWVSTKVETKEGVMEVLDKKLLGS FRDEMIQVLRIAIRCTYKNPALRPTMSEVVQLLIEADPCRCKSSNKAKDASSVTKIKNPFDL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49660		XIP1	XYLEM INTERMIXED WITH PHLOEM 1...		Lus10007233 [exp]	0	1
AT5G49660		XIP1	XYLEM INTERMIXED WITH PHLOEM 1...		Lus10028234 [exp]	1.0	0.9932
AT5G22090			Protein of unknown function (D...		Lus10013353 [exp]	1.4	0.9409
AT5G66900			Disease resistance protein (CC...		Lus10007359 [exp]	3.5	0.9350
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10014580 [exp]	3.9	0.9390
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10022306 [exp]	5.5	0.9324
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10030576 [exp]	5.7	0.9242
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10022304 [exp]	6.7	0.9329
AT1G79430	GARP	WDY, APL	WOODY, ALTERED PHLOEM DEVELOPM...		Lus10001754 [exp]	7.5	0.9303
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10032103 [exp]	9.0	0.9211
AT5G16000		NIK1	NSP-interacting kinase 1 (.1)		Lus10019145 [exp]	9.5	0.9109

Compare expression of checked genes

Lus10007233 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.