Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51580 230 / 6e-66 RNA-binding KH domain-containing protein (.1) AT5G15270 199 / 2e-55 RNA-binding KH domain-containing protein (.1.2) AT5G53060 184 / 2e-49 RNA-binding KH domain-containing protein (.1.2) AT5G64390 177 / 6e-46 HEN4 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) AT1G14170 161 / 1e-42 RNA-binding KH domain-containing protein (.1.2.3) AT5G46190 158 / 2e-40 RNA-binding KH domain-containing protein (.1) AT2G22600 150 / 6e-38 RNA-binding KH domain-containing protein (.1) AT4G18375 143 / 1e-35 RNA-binding KH domain-containing protein (.1.2) AT4G26000 100 / 4e-22 PEP PEPPER, RNA-binding KH domain-containing protein (.1) AT5G09560 100 / 1e-21 RNA-binding KH domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028237 [exp] 1239 / 0 AT5G64390 243 / 8e-71 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10034831 [exp] 221 / 5e-62 AT1G51580 409 / 2e-134 RNA-binding KH domain-containing protein (.1) Lus10005232 [exp] 201 / 2e-55 AT5G15270 634 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10030689 [exp] 194 / 2e-53 AT5G15270 638 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10022390 [exp] 179 / 2e-47 AT5G53060 692 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10005915 [exp] 175 / 2e-46 AT5G53060 599 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10035640 [exp] 169 / 7e-44 AT5G64390 337 / 8e-104 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10037163 [exp] 167 / 2e-43 AT5G15270 491 / 1e-167 RNA-binding KH domain-containing protein (.1.2) Lus10036767 [exp] 166 / 4e-43 AT5G15270 483 / 2e-165 RNA-binding KH domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G112200 [exp] 674 / 0 AT5G53060 243 / 7e-71 RNA-binding KH domain-containing protein (.1.2) Potri.010G251700 [exp] 236 / 8e-68 AT1G51580 434 / 9e-145 RNA-binding KH domain-containing protein (.1) Potri.015G011100 [exp] 203 / 1e-55 AT5G53060 699 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.017G085500 [exp] 192 / 5e-53 AT5G15270 592 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.004G123400 [exp] 187 / 6e-51 AT5G15270 596 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.012G017200 [exp] 186 / 1e-49 AT5G53060 656 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.017G042500 [exp] 181 / 1e-47 AT5G64390 345 / 1e-106 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Potri.017G114400 [exp] 174 / 1e-45 AT5G15270 259 / 8e-78 RNA-binding KH domain-containing protein (.1.2) Potri.010G167100 [exp] 167 / 5e-44 AT5G15270 455 / 3e-155 RNA-binding KH domain-containing protein (.1.2) Potri.008G088600 [exp] 164 / 5e-43 AT5G15270 454 / 5e-155 RNA-binding KH domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [flax] [poplar] KH PF00013 [flax] [poplar] KH_1 KH domain
Representative CDS sequence Show only first row Show all	>Lus10007236 pacid=23182148 polypeptide=Lus10007236 locus=Lus10007236.g ID=Lus10007236.BGIv1.0 annot-version=v1.0 ATGACTCTTATTTCTCAGCAGCCTCCTACGATCCAAACAATGGAACGCAAGAAAGTCAACGGTCAGAAATCGTTGAAGTCATCGAAGAAGGGAGGTCATG CTCCAACAACCATGGTACGCCATAATCGTCTCTATGGGGTTGTGGGGCTTCGAATTGGCTCCAGCAACCCTCAGCCCCCTCTGATCGAATCTCTTTCCTA CTTTTTAGGGGTGGGGGAGTTTTCTGTTCCGGGACTGTATGCTGTCATGTCTGCACAATTAACACCAGCGAAGCGACCGAATGATGCCGGTCAGATTGAA TCAAATGGTAAAGAGAAGTTGCAGAAGACCCTGAGCTCTAGTGAGCAGCCTTTGAGATCTTCAAATGGGTTTGTAAATTTCAGAGTGATGTGCCCTACTT CCAAGGTTGATCGTGTTATTGGGGAAGCTGGGCAAGTAATAACTGAAATTCTTGAAGAAACGGGCTTCTGTGTCAGAGTTGAGGAGGCTGTAGCTGGATG TGATGAGAGGGTGGTCGTTATTGAGAGTTCTCGAAAAAATACAGAAGATGTCAATGCAGAGAGCAAGGAGAATGCTAATGGAGGTGACACAGAAGAGAGC AAGGAAGGCGGTGATGGAGAGGCTAATGCAACCGCAGAAGATGATAGAAAGGACAGCACTGTTGCTCGTGGAGAAAAGGATGCTCTTCATTTGGATGAAA TGTCTGCGAATGGAACTTCTGCATTGAAGGCCTTGCTGTGTATCTTTGAAAGACTTGTTGAAGCAGAAACAGGGACAGAAGGAGGAGACGAGAAAAATGG CAAGCCTCCTACAATAATTTTGAGGTTACTTGTGCTCTCCAATCAGATTGGTTGCATCTTGGGAAAAGGTGGCAGTATAATCAAGCTAATGACAAATGAA AGTGGTGCGCAGATTCGAATACTTCCCAGGGATAAACTTCCTATATGTGTATCAGCTCGAGATGAACTACTTCTGATCACTGGAGAGATTGATGCTGTTA AGAGAGCTCTTTGTTCGGTTTGTATGAAGCTCTTAGAAAATTCACGTCAAGATCATGAATTGGTTCCTGCCACCTCGTCTGGGCTTTCATCTCAATCAGT AGATCATCTTGGTCCGAGAGCAGAAGCTCATGCACATTATCGAGGACCCCCAGGTCCTCCTGGGCCTCCTGATTTCCCCGAAATTGGCATTCAAGGTCAA ATGGGGCCTGCTACTGATGTACTAACCTTGCGCTTGCTCTGCCCTGATGGGAGGGCAGGAGTTGTCATCGGGAAAGGTGGATCTATGGTAAAGCTCCTTC TACGAGAGACTGGCTGTGACGTTAAGGTTATGGACCCTGTCCCTGACTGTCAAGATCGTGTAGTAGTTATCTCTAGTTCAGTGCACCCAGGAGATAGAAT ATCAGGTGTTCAAGATTGCGTGCTTCGTCTACTGACCAAGATATTGAATGCTCGACCTGATAACCAGGATAAGACTGTGATGACCCGACTCCTTATTACC CCAGATCAAATTGCTTGTCTACTTGGTAAGGCTGGTTCAATCATGGCTGAAATGAGAAAGTCAACAGGTGCCTATATTCGTATTCTACCAAAGAATCAGA TTCCAAAATGTGCTTCTGAAGGTGAAGAAGTTTTGCAGATAAATGGCGAGTTGCAAAGAGTTCTAGAAGCAATGGCGCAGATAACCACAAGATTACAGCA TCATTTCTTTGGCGACACATTGCCTTCTAATGGCCACCCTTCACATCCTGCCTTTTTAGATCATATCCCTCCGTTCCCTCCTCCATTTCCAGGGAGGAGG GAAATTTCACCTTCATTTATGCCATTCCACAATTTTAATGGCATGAGTGGCCCTCCTCAACGTCCTGGTTTCCCTCCCCTTGATGATCCTTCTCCATTCA TGCGCCATCTTCACAGACCTGGGATGCCCCCACATTTATCTGAACGAAAGCCATGGGGTCCTCAGGCACTTCCTGAAAGTAGCGCTCAAGTAGGCTTCCT GGACTTTCCTGGACCACCTCACGGAAGAATTTCTGGTCTTGAAGGTAGTCACCCAGCTATCACTACAAGTACTACAGTCGAAGTAGTTGTTCCACGTTCC ATTGTCCCGGTAATTTACGGAGAGGATGGGGCATGCTTGATGCAAATCCGACAGATATCGGAAGCAAAAATTATCATCACTGATCCAAAACCTGGAGCAA TAGAGACTGTTATCATTATATCTGGTACACCTGAGCAGACTAATGCTGCACAGAGTCTTATCCAAGCTTTTGTGATGAGTGAACAAGAATCTGCTTGA
AA sequence Show only first row Show all	>Lus10007236 pacid=23182148 polypeptide=Lus10007236 locus=Lus10007236.g ID=Lus10007236.BGIv1.0 annot-version=v1.0 MTLISQQPPTIQTMERKKVNGQKSLKSSKKGGHAPTTMVRHNRLYGVVGLRIGSSNPQPPLIESLSYFLGVGEFSVPGLYAVMSAQLTPAKRPNDAGQIE SNGKEKLQKTLSSSEQPLRSSNGFVNFRVMCPTSKVDRVIGEAGQVITEILEETGFCVRVEEAVAGCDERVVVIESSRKNTEDVNAESKENANGGDTEES KEGGDGEANATAEDDRKDSTVARGEKDALHLDEMSANGTSALKALLCIFERLVEAETGTEGGDEKNGKPPTIILRLLVLSNQIGCILGKGGSIIKLMTNE SGAQIRILPRDKLPICVSARDELLLITGEIDAVKRALCSVCMKLLENSRQDHELVPATSSGLSSQSVDHLGPRAEAHAHYRGPPGPPGPPDFPEIGIQGQ MGPATDVLTLRLLCPDGRAGVVIGKGGSMVKLLLRETGCDVKVMDPVPDCQDRVVVISSSVHPGDRISGVQDCVLRLLTKILNARPDNQDKTVMTRLLIT PDQIACLLGKAGSIMAEMRKSTGAYIRILPKNQIPKCASEGEEVLQINGELQRVLEAMAQITTRLQHHFFGDTLPSNGHPSHPAFLDHIPPFPPPFPGRR EISPSFMPFHNFNGMSGPPQRPGFPPLDDPSPFMRHLHRPGMPPHLSERKPWGPQALPESSAQVGFLDFPGPPHGRISGLEGSHPAITTSTTVEVVVPRS IVPVIYGEDGACLMQIRQISEAKIIITDPKPGAIETVIIISGTPEQTNAAQSLIQAFVMSEQESA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64390		HEN4	HUA ENHANCER 4, RNA-binding KH...		Lus10007236 [exp]	0	1
AT3G14120			unknown protein		Lus10015675 [exp]	3.2	0.9248
AT4G34430		ATSWI3D, CHB3	SWITCH/SUCROSE NONFERMENTING 3...		Lus10042329 [exp]	6.3	0.9162
AT5G46920			Intron maturase, type II famil...		Lus10003020 [exp]	8.1	0.9076
AT5G58450			Tetratricopeptide repeat (TPR)...		Lus10026402 [exp]	9.2	0.9110
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Lus10007652 [exp]	9.2	0.9048
AT5G07900			Mitochondrial transcription te...		Lus10040817 [exp]	9.2	0.8915
AT3G53940			Mitochondrial substrate carrie...		Lus10022597 [exp]	11.0	0.8984
AT4G32910			unknown protein		Lus10038723 [exp]	12.0	0.8971
AT1G02060			Tetratricopeptide repeat (TPR)...		Lus10017658 [exp]	13.9	0.9095
AT1G05460		SDE3	SILENCING DEFECTIVE, P-loop co...		Lus10010577 [exp]	14.0	0.8945

Compare expression of checked genes

Lus10007236 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.