Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22795 57 / 7e-10 unknown protein AT4G37820 55 / 2e-09 unknown protein AT4G33740 50 / 1e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028240 [exp] 222 / 2e-75 AT2G22795 59 / 1e-10 unknown protein Lus10019253 [exp] 59 / 1e-10 AT4G37820 110 / 3e-25 unknown protein Lus10011571 [exp] 59 / 1e-10 AT4G37820 112 / 2e-25 unknown protein Lus10012453 [exp] 57 / 9e-10 AT4G33740 95 / 1e-20 unknown protein Lus10020507 [exp] 55 / 3e-09 AT4G33740 103 / 1e-23 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G112800 [exp] 58 / 1e-10 AT4G37820 83 / 1e-17 unknown protein Potri.007G008600 [exp] 57 / 6e-10 AT2G22795 103 / 2e-22 unknown protein Potri.009G083900 [exp] 54 / 8e-09 AT4G33740 94 / 2e-20 unknown protein Potri.001G288800 [exp] 48 / 7e-07 AT4G33740 93 / 7e-20 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007239 pacid=23182165 polypeptide=Lus10007239 locus=Lus10007239.g ID=Lus10007239.BGIv1.0 annot-version=v1.0 ATGTCGATGAAGCAGTCGCCGGTCGGGATCAGGACAAAGAGCTCATCAAAGGGGTTCAAGGTAAAACATGTTATGCAGACATTTCTACTGCTTGTCATAT CCATTTGGCTGATTTACCAGATGAAGCACTCCTACGACAACAAGGCGGCGGCTCTCACAGGACATCATGGGCTTCCTTCAGTAATAGGGAGGAAACACCT GCTCCACCCAATTGCTACAAGTGAAACTGAGATTTTGGGTCAAAATAATGGCAAGGGAGAGATGGATGAGCAAGTGAAAAGTGAGGACACTGAAGGGAGA GTCGGTGGAAGTGATGAAGGGGAGAGAACAGAGGAGGAAGAGCCAGAGGAAGTGGAGGATCTCATTGATGTGGAGGATAGGGAAACTGGCAAGGCCAGTA TTGATAACAGCATCGGTTCATTAGGCAATGAGGATGATGGTGATGATGATGAACTCAAAAGCAGCATTTGA
AA sequence Show only first row Show all	>Lus10007239 pacid=23182165 polypeptide=Lus10007239 locus=Lus10007239.g ID=Lus10007239.BGIv1.0 annot-version=v1.0 MSMKQSPVGIRTKSSSKGFKVKHVMQTFLLLVISIWLIYQMKHSYDNKAAALTGHHGLPSVIGRKHLLHPIATSETEILGQNNGKGEMDEQVKSEDTEGR VGGSDEGERTEEEEPEEVEDLIDVEDRETGKASIDNSIGSLGNEDDGDDDELKSSI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22795			unknown protein		Lus10007239 [exp]	0	1
AT2G22795			unknown protein		Lus10028240 [exp]	1.0	0.9156
AT3G13845			unknown protein		Lus10015617 [exp]	4.9	0.8141
AT1G60783			unknown protein		Lus10004622 [exp]	7.6	0.8710
					Lus10028987 [exp]	9.3	0.7707
AT5G08350			GRAM domain-containing protein...		Lus10017372 [exp]	10.6	0.8277
					Lus10015620 [exp]	11.0	0.8247
AT4G23700		ATCHX17	cation/H+ exchanger 17, cation...		Lus10024716 [exp]	14.7	0.7999
AT2G46640			unknown protein		Lus10005993 [exp]	14.7	0.8211
AT4G10300			RmlC-like cupins superfamily p...		Lus10035659 [exp]	16.1	0.8300
AT3G48660			Protein of unknown function (D...		Lus10035198 [exp]	18.8	0.7744

Compare expression of checked genes

Lus10007239 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.