Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37810 58 / 5e-11 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028241 [exp] 125 / 1e-37 AT4G37810 74 / 2e-18 unknown protein Lus10011591 [exp] 66 / 1e-13 AT4G37810 102 / 6e-29 unknown protein Lus10011570 [exp] 49 / 1e-07 AT4G37810 79 / 8e-20 unknown protein Lus10019254 [exp] 45 / 2e-06 AT4G37810 74 / 5e-18 unknown protein Lus10006016 [exp] 40 / 0.0007 AT3G13898 76 / 4e-17 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G112900 [exp] 86 / 3e-21 AT4G37810 90 / 9e-24 unknown protein Potri.003G042300 [exp] 40 / 0.0002 AT3G13898 80 / 4e-20 unknown protein Potri.007G095400 [exp] 40 / 0.0002 AT5G10310 105 / 2e-30 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007240 pacid=23182153 polypeptide=Lus10007240 locus=Lus10007240.g ID=Lus10007240.BGIv1.0 annot-version=v1.0 ATGCACTGCTCAAAGTGTCAGTCTACTCAGCATGATTTTCGTCGCTGCCTTCAGAGGAACGAGGCTCTAGATGCTGGATCGAGGAGGGGTCGTAGGAAGA GAGAACCAACTGCTGAAGCGCCTGATGGTGGAGTTCGTAGAAGTGCAAGAAGGCTTTTCAGAGAAGCTACTCCATCACCAATGCATGTTCCGACGAGAAA TGGAACCTGCGGGTATTGCAAGGGTAAGCCACAACAGCAGGAGCTGCCAGCTGAAGAAGGGGGTGCAGGAAGAACAATCACCAAGCTGCTTGAAGCTCAA CAGCTGCAGAAAGGAGTTGCAGAAATGATGATGGTGAGGAGTCGGACGATAGGGTCGAGGCCCCCAAAATGTGATGACATAAGGTGTCACTCCTGCGGCG GCCAATGCGTAGCCGTCCAAGTCCCAGTGACGGCAGCGGCGCAACCTCAAACAAACTATTTCACTCATCATGTTGGTAGCGTTCCGACAACTGCTTACAA CAGAGGCAGTGAAGATTTCTCCAATTACAAGCCAATGAGTTGGAAGTGCAAATGTGGCAGCTTCATATTCAATCCTTGA
AA sequence Show only first row Show all	>Lus10007240 pacid=23182153 polypeptide=Lus10007240 locus=Lus10007240.g ID=Lus10007240.BGIv1.0 annot-version=v1.0 MHCSKCQSTQHDFRRCLQRNEALDAGSRRGRRKREPTAEAPDGGVRRSARRLFREATPSPMHVPTRNGTCGYCKGKPQQQELPAEEGGAGRTITKLLEAQ QLQKGVAEMMMVRSRTIGSRPPKCDDIRCHSCGGQCVAVQVPVTAAAQPQTNYFTHHVGSVPTTAYNRGSEDFSNYKPMSWKCKCGSFIFNP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37810			unknown protein		Lus10007240 [exp]	0	1
AT5G18880			RNA-directed DNA polymerase (r...		Lus10023044 [exp]	1.4	0.9557
AT2G26580	YABBY	YAB5	YABBY5, plant-specific transcr...		Lus10019407 [exp]	2.2	0.9577
AT2G01770		ATVIT1, VIT1	vacuolar iron transporter 1 (....		Lus10021809 [exp]	3.2	0.9347
AT1G13290	C2H2ZnF	WIP6, DOT5	WIP domain protein 6, DEFECTIV...		Lus10021700 [exp]	3.5	0.9431
AT4G15620			Uncharacterised protein family...		Lus10041528 [exp]	4.2	0.9441
AT3G23255			unknown protein		Lus10011825 [exp]	6.9	0.8900
					Lus10019515 [exp]	6.9	0.8970
AT5G65120			unknown protein		Lus10000581 [exp]	8.2	0.8821
AT5G08250			Cytochrome P450 superfamily pr...		Lus10013438 [exp]	8.9	0.9123
AT5G60970	TCP	TCP5	TEOSINTE BRANCHED 1, cycloidea...		Lus10017856 [exp]	10.2	0.9228

Compare expression of checked genes

Lus10007240 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.