Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58370 1016 / 0 ATXYN1, RXF12 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) AT4G08160 954 / 0 Atxyn3 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1.2) AT1G10050 905 / 0 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) AT4G38650 248 / 5e-73 Glycosyl hydrolase family 10 protein (.1) AT4G33830 226 / 1e-64 Glycosyl hydrolase family 10 protein (.1) AT4G33840 217 / 1e-61 Glycosyl hydrolase family 10 protein (.1) AT4G33860 207 / 5e-58 Glycosyl hydrolase family 10 protein (.1) AT4G38300 187 / 8e-54 glycosyl hydrolase family 10 protein (.1) AT4G33820 189 / 2e-51 Glycosyl hydrolase superfamily protein (.1) AT4G33810 184 / 3e-50 Glycosyl hydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028242 [exp] 1534 / 0 AT1G58370 998 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Lus10007243 [exp] 1021 / 0 AT1G58370 1291 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Lus10028243 [exp] 1018 / 0 AT1G58370 1278 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Lus10037528 [exp] 979 / 0 AT1G58370 1064 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Lus10011465 [exp] 563 / 0 AT1G10050 807 / 0.0 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Lus10025054 [exp] 278 / 4e-84 AT4G38650 677 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10034490 [exp] 221 / 3e-63 AT4G38650 566 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10020985 [exp] 199 / 5e-55 AT4G33840 634 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10033784 [exp] 203 / 1e-54 AT4G33820 480 / 2e-160 Glycosyl hydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G113066 [exp] 1118 / 0 AT1G58370 1064 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Potri.002G113132 [exp] 1072 / 0 AT1G58370 1352 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Potri.004G173300 [exp] 268 / 2e-80 AT4G38650 753 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.009G087800 [exp] 221 / 8e-63 AT4G33840 573 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.009G087700 [exp] 219 / 3e-62 AT4G33860 529 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.009G087600 [exp] 198 / 6e-55 AT4G33820 506 / 4e-175 Glycosyl hydrolase superfamily protein (.1) Potri.009G087900 [exp] 199 / 7e-55 AT4G33840 695 / 0.0 Glycosyl hydrolase family 10 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF02018 [flax] [poplar] CBM_4_9 Carbohydrate binding domain CL0058 [flax] [poplar] Glyco_hydro_tim PF00331 [flax] [poplar] Glyco_hydro_10 Glycosyl hydrolase family 10
Representative CDS sequence Show only first row Show all	>Lus10007242 pacid=23182160 polypeptide=Lus10007242 locus=Lus10007242.g ID=Lus10007242.BGIv1.0 annot-version=v1.0 ATGGCTAAACACTTGGCTTTCTCTGCCTCCATTGCTATCCTCCTCATGTTCCCCTGTTTGCTTCCAAATCTTACTCTTGCTGCTTCTTATGTTGATGGTC GGTCGATTCTGGGTCCATATTCACGGCACCACCACCAGCACCAGGCAAATCATGCAGGGGTTGATGCTGCTGTGAATGATGATAACATTATACTGAATCC GAGATTTGAGGATGGACTTAAGAATTGGTCAGCGAAAGGGTGCAGGATTGAGTTACATGAATCAATGAGTGATGGGAAAATCGTGCCTCAAATGGGGAAA TTCTTTGTTTCAGCAACACAACGAACAGCAACATGGAATGGAATTGAGCAGGAGATCACTGGGCGTGTACAGCGAGAAGTTCCTTATGCGGTTACTGCAG TAGCTAGGATATATGGCAACAATGTCACTGCTGCTACTTTACAGCTCACTCTTTGGGTCCAAGAGCAAGATCTTCGTGAACAATATATAGCTATTTCCAG CTTGCAGGCGACAGACAAGGATTGGATGCAACTGCAGGGGAAGTTTCTTCTTAATAGTTCACCATCAAGAGCGATTATTTTCATTGAAGGCCCACCGGCT GGAACCGATATTCTTATAAATAGTTTGATTGTGCAGCACGCACCAAAAATGCCTTCCTCACCACGACCAGTTTTCCAGGATCCGGCATTTTCCATGAATG TGATTGAGAACAGCAATCTTGAGGATGGAACCTCCACTAGCTGGTTTGCGCTGGGAAACTGCTCTCTGAGTGTTGAAAGTGGTTCTCCCTACATTCTCCC ACCAATGGCGAAAGATTCGCTTCGGTCACACGACTCTCTTAGTGGTAAGTATCTCCGTGTAACGAATCGATCGCAGTCTTGGATGGGCCCTGCGCAAATA GTGACTGACAAGCTCAGAGTGTACTTGACTTATCAAGTATCGGCATGGGTGCGAATTGGCCCTGGAGCAACTGGTAGTCAGATTGTGAATGCTGCATTAG GAGTTGGTAGTGATTGGATCAATGGGGGTGAAGTTGAGGTGAATGATGGGAACTGGCATGAGATTGGAGGGACATTCAGACTTGAGAAACAGCCATCTAA CGTTATGGTTTATGTCCAAGGTCCTGCATCAGGTGTTGATTTAATGGTTGCTGGGCTTCAGATTTTTGCTGTAAATAGGGAGGCAAGGTATAGCTATTTG AAGAAGCAAACTGATAAGATACGCAAACGAGATGTCGTTTTGAAATTTCCGGCAGCTGGTCTTAATAACATCAGTTATATTAAAGTGAAACAGACACAAA ACAGTTTTCCTCTGGGGTCATGCATAACGAGAACAAGCTTGGACAATGACAAGTTTGTCAATTTCTTGCTGGACAACTTCAACTGGGTTGTTTTCGAAAA CGAAATGAAGTGGTCATGGACAGAACCACAACAAGGTAAATTCAACTACAAGGAAGCTGATGATATGTTGGAATTCTGCAGAACCCACAACCTGAAAGTC AGAGGTCACTGCATCTTCTGGGAAGTGGAGTCAAGAATCCAGTCGTGGGTAAGATCTCTTAACGAAACTAGCTTAATGAATGCGGTTCAGAATCGACTGA ACGACCTTCTCCCACGTTACAAGGGGAAATTGAATCACTATGACGTAAACAACGAGATGCTCCATGGATCTTTCTACCAAGACAGATTGGGATATGATAT ACGAGCCGACATGTTCAGAACAGCCCACCAGCTTGACCCATCAGCAACCCTTTTCGTGAATGACTATCACATTGAGGATGGAAGCGACGTGCATTCAACA CCGGAGATGTACACGAGACAAGTCCTTGATCTCCGAGAGCAAGGTGCCGAGATTGGGGGAATTGGTGTCCAAGGACATATTGAAGTTCCAGTGGGGACTA TAGTTTCTTCCGCATTTGATAAACTCGGAACTCTTGGACTTCCCATCTGGGTAACAGAGCTTGACGTGTCTTCTGTGAATGAGTTTATCAGAGCGGACGA TCTCGAAGTAATGCTGCGAGAAGCTTTTGCCCATCCTGCTGTGGAAGGTGTGGTCCTTTGGGGTTTCTGGGAGCTATACATGTCTAGGAAAAATGCACAT TTAGTAGATGCAAGTGGCGAGATAAACCAAGCTGGGAAAAGATTTTTGTCTCTTAAGAAAGAATGGTTGTCTGAGGCGAAAGGCAGCATCGACGGCAAAG GAGAGTTCAGATTCAGAGGCTTTCATGGAACTTACGACATTCAAATTGAGTCATCGACGACACAGACCACAAACAAGACATTCGTTGTCGATAAAGGGCA TTCGCCACTGGTCGTGCCCATCGACCTATAG
AA sequence Show only first row Show all	>Lus10007242 pacid=23182160 polypeptide=Lus10007242 locus=Lus10007242.g ID=Lus10007242.BGIv1.0 annot-version=v1.0 MAKHLAFSASIAILLMFPCLLPNLTLAASYVDGRSILGPYSRHHHQHQANHAGVDAAVNDDNIILNPRFEDGLKNWSAKGCRIELHESMSDGKIVPQMGK FFVSATQRTATWNGIEQEITGRVQREVPYAVTAVARIYGNNVTAATLQLTLWVQEQDLREQYIAISSLQATDKDWMQLQGKFLLNSSPSRAIIFIEGPPA GTDILINSLIVQHAPKMPSSPRPVFQDPAFSMNVIENSNLEDGTSTSWFALGNCSLSVESGSPYILPPMAKDSLRSHDSLSGKYLRVTNRSQSWMGPAQI VTDKLRVYLTYQVSAWVRIGPGATGSQIVNAALGVGSDWINGGEVEVNDGNWHEIGGTFRLEKQPSNVMVYVQGPASGVDLMVAGLQIFAVNREARYSYL KKQTDKIRKRDVVLKFPAAGLNNISYIKVKQTQNSFPLGSCITRTSLDNDKFVNFLLDNFNWVVFENEMKWSWTEPQQGKFNYKEADDMLEFCRTHNLKV RGHCIFWEVESRIQSWVRSLNETSLMNAVQNRLNDLLPRYKGKLNHYDVNNEMLHGSFYQDRLGYDIRADMFRTAHQLDPSATLFVNDYHIEDGSDVHST PEMYTRQVLDLREQGAEIGGIGVQGHIEVPVGTIVSSAFDKLGTLGLPIWVTELDVSSVNEFIRADDLEVMLREAFAHPAVEGVVLWGFWELYMSRKNAH LVDASGEINQAGKRFLSLKKEWLSEAKGSIDGKGEFRFRGFHGTYDIQIESSTTQTTNKTFVVDKGHSPLVVPIDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Lus10007242 [exp]	0	1
AT1G80620			S15/NS1, RNA-binding protein (...		Lus10009249 [exp]	3.5	0.9375
AT2G35040			AICARFT/IMPCHase bienzyme fami...		Lus10013871 [exp]	4.9	0.9445
AT5G55410			Bifunctional inhibitor/lipid-t...		Lus10032575 [exp]	10.6	0.9445
AT5G25940			early nodulin-related (.1)		Lus10019434 [exp]	11.2	0.9386
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Lus10028242 [exp]	11.4	0.9410
AT1G29880			glycyl-tRNA synthetase / glyci...		Lus10029203 [exp]	13.5	0.9310
AT5G27620		CYCH;1	cyclin H;1 (.1)		Lus10037811 [exp]	13.9	0.9289
AT5G48490			Bifunctional inhibitor/lipid-t...		Lus10038233 [exp]	15.0	0.9393
AT5G48490			Bifunctional inhibitor/lipid-t...		Lus10025866 [exp]	18.2	0.9328
AT1G16300		GAPCP-2	glyceraldehyde-3-phosphate deh...		Lus10000872 [exp]	18.7	0.9343

Compare expression of checked genes

Lus10007242 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.