Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49680 303 / 2e-101 ATBCAT-3 ,BCAT3 branched-chain aminotransferase 3 (.1.2) AT5G65780 301 / 8e-101 ATBCAT-5 branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.1), branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.2) AT1G10070 257 / 5e-84 ATBCAT-2 branched-chain amino acid transaminase 2 (.1.2.3) AT1G50110 238 / 1e-76 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1) AT1G50090 237 / 3e-76 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1) AT1G10060 216 / 3e-68 ATBCAT-1 branched-chain amino acid transaminase 1 (.1.2.3) AT3G19710 211 / 2e-66 BCAT4 branched-chain aminotransferase4 (.1) AT5G27410 67 / 2e-12 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2) AT3G05190 59 / 9e-10 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011567 [exp] 289 / 5e-96 AT3G49680 615 / 0.0 branched-chain aminotransferase 3 (.1.2) Lus10028246 [exp] 293 / 1e-95 AT1G10070 498 / 3e-174 branched-chain amino acid transaminase 2 (.1.2.3) Lus10019258 [exp] 286 / 7e-95 AT3G49680 613 / 0.0 branched-chain aminotransferase 3 (.1.2) Lus10011604 [exp] 277 / 1e-91 AT3G49680 568 / 0.0 branched-chain aminotransferase 3 (.1.2) Lus10032806 [exp] 239 / 1e-77 AT1G10070 484 / 1e-172 branched-chain amino acid transaminase 2 (.1.2.3) Lus10007247 [exp] 206 / 1e-63 AT1G10070 517 / 0.0 branched-chain amino acid transaminase 2 (.1.2.3) Lus10028247 [exp] 199 / 3e-62 AT1G10070 469 / 6e-168 branched-chain amino acid transaminase 2 (.1.2.3) Lus10035342 [exp] 58 / 3e-09 AT5G27410 910 / 0.0 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2) Lus10029984 [exp] 45 / 5e-05 AT5G27410 869 / 0.0 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G008000 [exp] 307 / 3e-103 AT5G65780 578 / 0.0 branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.1), branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.2) Potri.002G113600 [exp] 264 / 1e-86 AT1G10070 555 / 0.0 branched-chain amino acid transaminase 2 (.1.2.3) Potri.009G082600 [exp] 253 / 3e-82 AT1G50110 448 / 4e-158 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1) Potri.009G082700 [exp] 226 / 9e-72 AT1G10070 446 / 2e-156 branched-chain amino acid transaminase 2 (.1.2.3) Potri.005G039100 [exp] 57 / 4e-09 AT5G27410 882 / 0.0 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01063 [flax] [poplar] Aminotran_4 Amino-transferase class IV
Representative CDS sequence Show only first row Show all	>Lus10007246 pacid=23182147 polypeptide=Lus10007246 locus=Lus10007246.g ID=Lus10007246.BGIv1.0 annot-version=v1.0 ATGACTTTTACAAACTGGGACTGCCTCGGATTCGATCCCTTACCCACAGACTATATGTATGTGATGAAGTGTTCTGGAGGTGATACATTTTCAGATGGGC AGTTGCTACCATTTGGGAAGATTGCATTGAATCCTTTCTCTTCTGTCTTGAATTATGGACAGGGCATAATTGAAGGGCTGAAAGCACACAAGAAAGCAAT TCCACCTCCAAATAAAGGCTTTCTGCACATCCGTCCGTTGCTTCTGGGGACTAGCTCTTCTCTTAGTCTAACTCCCTCTTCTGAGTTTATGTTTGTTACA TATGTTACCCCCGTTGGGAGCTATTTTGAGAGTAGTTTGGAGCCAATTAACCTGTTGATTGATGATGAAACTCATCGAGCCGTTCCAGGTGGAGTTGGAT GTATAAAGGCTATAGGGAACTATGCTGGGATTTTGAAAGCTCATGGTAGTGCCAAGAGAAATGGTTTCAATGATGTTTTATACGTTGATTCAGTCTATAA CAGATACTTGGAAGAAGTTTCCACTGCTAATATCTTTGTTGTAAAGGATGATAAAATATGCACACCTAAGCTAGGAGGGACGATATTGCCTGGGATTACT CGGTCGAGTACGATCGACCTTGCTAGGATCCTGGATTTTCAAGTAACGGAGCAGCTTGTATCAATTGAGGAATTACTTAATGCTGATGAAGTATTCTGCA CAGGACATGCTATTGGGTTATTGCCTGTGGGTAGTATAACTTACCATGATAAAAGGGTCTGCTACGGAGATGGTGGTCCAGGCAAGGTAACCCAACGGCT CTCTTCTCATCTAGCAAACATACAGATGGGACTTGCAGAAGATACAATGGGTTGGACTATTGTACTGAAGTAA
AA sequence Show only first row Show all	>Lus10007246 pacid=23182147 polypeptide=Lus10007246 locus=Lus10007246.g ID=Lus10007246.BGIv1.0 annot-version=v1.0 MTFTNWDCLGFDPLPTDYMYVMKCSGGDTFSDGQLLPFGKIALNPFSSVLNYGQGIIEGLKAHKKAIPPPNKGFLHIRPLLLGTSSSLSLTPSSEFMFVT YVTPVGSYFESSLEPINLLIDDETHRAVPGGVGCIKAIGNYAGILKAHGSAKRNGFNDVLYVDSVYNRYLEEVSTANIFVVKDDKICTPKLGGTILPGIT RSSTIDLARILDFQVTEQLVSIEELLNADEVFCTGHAIGLLPVGSITYHDKRVCYGDGGPGKVTQRLSSHLANIQMGLAEDTMGWTIVLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49680		ATBCAT-3 ,BCAT3	branched-chain aminotransferas...		Lus10007246 [exp]	0	1
					Lus10023136 [exp]	1.4	0.9712
					Lus10004849 [exp]	2.4	0.9544
					Lus10011452 [exp]	3.0	0.9430
AT5G16600	MYB	ATMYB43	myb domain protein 43 (.1)		Lus10010974 [exp]	3.5	0.9366
AT3G51590		LTP12	lipid transfer protein 12 (.1)		Lus10009003 [exp]	7.7	0.9208
AT1G49740			PLC-like phosphodiesterases su...		Lus10041594 [exp]	10.4	0.8993
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10015094 [exp]	12.6	0.7540
AT5G47180			Plant VAMP (vesicle-associated...		Lus10000591 [exp]	13.0	0.8559
AT2G40780			Nucleic acid-binding, OB-fold-...		Lus10012866 [exp]	14.3	0.8249
					Lus10011497 [exp]	21.4	0.9195

Compare expression of checked genes

Lus10007246 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.