Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10070 494 / 5e-175 ATBCAT-2 branched-chain amino acid transaminase 2 (.1.2.3) AT3G49680 429 / 3e-149 ATBCAT-3 ,BCAT3 branched-chain aminotransferase 3 (.1.2) AT5G65780 426 / 1e-147 ATBCAT-5 branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.1), branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.2) AT1G10060 399 / 8e-138 ATBCAT-1 branched-chain amino acid transaminase 1 (.1.2.3) AT1G50110 386 / 6e-133 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1) AT1G50090 382 / 2e-131 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1) AT3G19710 358 / 7e-122 BCAT4 branched-chain aminotransferase4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028247 [exp] 569 / 0 AT1G10070 469 / 6e-168 branched-chain amino acid transaminase 2 (.1.2.3) Lus10028246 [exp] 431 / 2e-147 AT1G10070 498 / 3e-174 branched-chain amino acid transaminase 2 (.1.2.3) Lus10019258 [exp] 419 / 4e-145 AT3G49680 613 / 0.0 branched-chain aminotransferase 3 (.1.2) Lus10011567 [exp] 414 / 5e-143 AT3G49680 615 / 0.0 branched-chain aminotransferase 3 (.1.2) Lus10032806 [exp] 408 / 5e-142 AT1G10070 484 / 1e-172 branched-chain amino acid transaminase 2 (.1.2.3) Lus10011604 [exp] 399 / 2e-137 AT3G49680 568 / 0.0 branched-chain aminotransferase 3 (.1.2) Lus10007246 [exp] 198 / 2e-60 AT3G49680 327 / 6e-111 branched-chain aminotransferase 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G113600 [exp] 535 / 0 AT1G10070 555 / 0.0 branched-chain amino acid transaminase 2 (.1.2.3) Potri.007G008000 [exp] 434 / 6e-151 AT5G65780 578 / 0.0 branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.1), branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.2) Potri.009G082600 [exp] 394 / 7e-136 AT1G50110 448 / 4e-158 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1) Potri.009G082700 [exp] 393 / 3e-135 AT1G10070 446 / 2e-156 branched-chain amino acid transaminase 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01063 [flax] [poplar] Aminotran_4 Amino-transferase class IV
Representative CDS sequence Show only first row Show all	>Lus10007247 pacid=23182151 polypeptide=Lus10007247 locus=Lus10007247.g ID=Lus10007247.BGIv1.0 annot-version=v1.0 ATGTTTCCGACAACCGCTTCACGTATTCGAAGTTTGGTTCAGTCTCTTGGATCCATCTCTTCTTTCTCCCAGATCGGGATCGGAGCCCGAAATTCCTACA ATTCTGGCGCTGCATCTTCACTGCGACATGTTGTCAAACCATCTACTTACAGCGAGGATGAGTATGCGGACGTGGATTGGGATAAGCTTGGATTTGGCAT CACCCCAGCTGATTACATGTACATAAGCAAGTGTAAAACAGACGGTGAGTTTCGCCAAGGCCAAGTTACTCGTTATGCCGCACTCGAACTCAGCCCTTCC GCTGGAGTTCTTAACTATGGACAGGCAAGTGAATCAATCAACAGAAAGAAACAATTCATTTCTTTGTATGTATTGAATATTGATCATGGATTTATTTATT CATTCACACAGGGGTTATACGAAGGAACAAAGGCGTACAGAAAAGAAGACGGGAAGCTACTGGTTTTCCGCCCAGATGAAAATGCCCTGAGGATGAAGAT GGGCGCTGACCGACTCTGCATGCCCTGTCCGACCGTTGTCCAATTCGTGGACGCAGTTAAAAGAGTTGCCATGGCAAACAAGCGATGGACGCCTCCTCCT GGGAAAGGAACTATGTATATAAGGCCTTTGCTGATGGGGAGCGGTCCGATATTGGGATTGGCTCCAGCTCCTGAATACACTTTCCTCATCTATTGCTCCC CCGTTGCCAACTATTTCAAGGAAGGTTTTGCACCGCTGAATCTATACGTGGAGGATGAATTCCATCGTGCAGCTCGTGGAGGAGCTGGTGGGGTCAAATC CATAACCAATTATGCACCGGTTCTGAAAGCAATTGCCAAAGCAAAACAGAGTGGATATTCTGACGTTCTGTATCTGGATTCGGTCAACAAAAGATACCTT GAGGAGGTCTCTTCCTGCAACGTGTTCCTCGTCAAGGGGAAAGTAATATCGACGCCGGCAGCAGTGGGGACCATACTTGAAGGCGTAACTAGAAAGAGCA TAATCGAAATTGCCGGCGATCAGGGGTACCAGGTTGAAGAACGAGCGGTGGGGGTAGAAGAGCTGGAGGAGGCGGAGGAAGTGTTCTGTACAGGGACGGC GGTGGGTGTGGCCTCCGTGGGATCCATAACGTATCAGGGGAAAAGGATGGAGTACAGGGTGGGAGGTGAGACGGTGGCGAAGGAGCTATACATGATTTTG GAAGGGATAAAGAGTGGAGCAATTGAGGACAAGAAAGGTTGGGTTGTTGAGATTCACTGA
AA sequence Show only first row Show all	>Lus10007247 pacid=23182151 polypeptide=Lus10007247 locus=Lus10007247.g ID=Lus10007247.BGIv1.0 annot-version=v1.0 MFPTTASRIRSLVQSLGSISSFSQIGIGARNSYNSGAASSLRHVVKPSTYSEDEYADVDWDKLGFGITPADYMYISKCKTDGEFRQGQVTRYAALELSPS AGVLNYGQASESINRKKQFISLYVLNIDHGFIYSFTQGLYEGTKAYRKEDGKLLVFRPDENALRMKMGADRLCMPCPTVVQFVDAVKRVAMANKRWTPPP GKGTMYIRPLLMGSGPILGLAPAPEYTFLIYCSPVANYFKEGFAPLNLYVEDEFHRAARGGAGGVKSITNYAPVLKAIAKAKQSGYSDVLYLDSVNKRYL EEVSSCNVFLVKGKVISTPAAVGTILEGVTRKSIIEIAGDQGYQVEERAVGVEELEEAEEVFCTGTAVGVASVGSITYQGKRMEYRVGGETVAKELYMIL EGIKSGAIEDKKGWVVEIH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Lus10007247 [exp]	0	1
AT1G11380			PLAC8 family protein (.1)		Lus10018410 [exp]	1.4	0.9868
AT4G16520		ATG8F	autophagy 8f, Ubiquitin-like s...		Lus10028933 [exp]	1.7	0.9827
AT1G08570		ACHT4	atypical CYS HIS rich thiored...		Lus10019087 [exp]	2.0	0.9841
AT4G21790		ATTOM1, TOM1	tobamovirus multiplication 1 (...		Lus10018348 [exp]	3.5	0.9759
AT1G35190			2-oxoglutarate (2OG) and Fe(II...		Lus10043026 [exp]	3.7	0.9792
AT3G06850		DIN3, LTA1, BCE...	DARK INDUCIBLE 3, 2-oxoacid de...		Lus10006498 [exp]	4.5	0.9816
AT3G60340			alpha/beta-Hydrolases superfam...		Lus10004375 [exp]	5.3	0.9743
AT1G13450	Trihelix	GT-1	GT-1, Homeodomain-like superfa...		Lus10036978 [exp]	5.5	0.9798
AT1G47128		RD21A, RD21	RESPONSIVE TO DEHYDRATION 21A,...		Lus10002827 [exp]	5.7	0.9677
AT1G14160			Uncharacterised protein family...		Lus10037160 [exp]	7.4	0.9760

Compare expression of checked genes

Lus10007247 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.