Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49700 108 / 1e-29 AtACS9, ACS9, ETO3 ETHYLENE OVERPRODUCING 3, 1-aminocyclopropane-1-carboxylate synthase 9 (.1) AT4G37770 108 / 3e-29 ACS8 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) AT5G65800 105 / 2e-28 CIN5, ETO2, ACS5, ATACS5 ETHYLENE OVERPRODUCER 2, CYTOKININ-INSENSITIVE 5, ACC synthase 5 (.1) AT4G08040 98 / 2e-25 ACS11 1-aminocyclopropane-1-carboxylate synthase 11 (.1) AT2G22810 97 / 4e-25 ACC4, ACS4, ATACS4 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID SYNTHASE POLYPEPTIDE, 1-aminocyclopropane-1-carboxylate synthase 4 (.1) AT3G61510 91 / 9e-23 AT-ACS1, ACS1 ARABIDOPSIS THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1, ACC synthase 1 (.1) AT1G01480 87 / 6e-22 AT-ACC2, ACS2 1-amino-cyclopropane-1-carboxylate synthase 2 (.1.2) AT4G26200 84 / 1e-20 ACS7, ATACS7 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) AT4G11280 79 / 1e-18 ATACS6, ACS6 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1) AT1G62960 70 / 1e-15 ACS10 ACC synthase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007714 [exp] 153 / 3e-46 AT3G49700 585 / 0.0 ETHYLENE OVERPRODUCING 3, 1-aminocyclopropane-1-carboxylate synthase 9 (.1) Lus10010243 [exp] 117 / 1e-32 AT4G37770 570 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Lus10011565 [exp] 109 / 1e-29 AT4G37770 740 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Lus10039647 [exp] 100 / 2e-26 AT4G37770 739 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Lus10007223 [exp] 100 / 3e-26 AT4G37770 747 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Lus10017521 [exp] 92 / 3e-23 AT4G11280 643 / 0.0 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1) Lus10024673 [exp] 89 / 2e-22 AT1G01480 610 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 2 (.1.2) Lus10032301 [exp] 89 / 2e-22 AT1G01480 609 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 2 (.1.2) Lus10032695 [exp] 88 / 5e-22 AT4G26200 659 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G113900 [exp] 115 / 6e-32 AT4G37770 682 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Potri.014G012600 [exp] 100 / 2e-26 AT4G37770 755 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Potri.018G067000 [exp] 98 / 1e-25 AT4G26200 676 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Potri.006G149600 [exp] 97 / 2e-25 AT4G26200 651 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Potri.007G007800 [exp] 97 / 3e-25 AT4G37770 749 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Potri.001G099400 [exp] 88 / 5e-22 AT4G11280 656 / 0.0 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1) Potri.003G132300 [exp] 85 / 7e-21 AT4G11280 659 / 0.0 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1) Potri.002G163700 [exp] 82 / 6e-20 AT3G61510 684 / 0.0 ARABIDOPSIS THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1, ACC synthase 1 (.1) Potri.003G117700 [exp] 66 / 3e-14 AT1G62960 664 / 0.0 ACC synthase 10 (.1) Potri.015G132100 [exp] 66 / 6e-14 AT5G51690 676 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00155 [flax] [poplar] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Lus10007249 pacid=23182172 polypeptide=Lus10007249 locus=Lus10007249.g ID=Lus10007249.BGIv1.0 annot-version=v1.0 ATGCGGGGGTTGTTTTGGTGGGTGGACATGAGGAGAGATGATGAAGAGAGTTTTGAAGCGGAGAAAGAGCTGTGGAAGGAGATGCTGTTTGAGGTTGGTG TTAATATATCGCGCGGTTCGTCTTGCCATTGTTCCGAGCCAGGGTGGTTCAGGTTCTGCTTTGCGAATTTGTCCGAAGAGACGTTGGATGTCGCCATGAA ACGGATCAGCGACTTCGTTACCGGACGGCGTACTGATTTTAAAAGTGAAGTGATGTGA
AA sequence Show only first row Show all	>Lus10007249 pacid=23182172 polypeptide=Lus10007249 locus=Lus10007249.g ID=Lus10007249.BGIv1.0 annot-version=v1.0 MRGLFWWVDMRRDDEESFEAEKELWKEMLFEVGVNISRGSSCHCSEPGWFRFCFANLSEETLDVAMKRISDFVTGRRTDFKSEVM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49700		AtACS9, ACS9, E...	ETHYLENE OVERPRODUCING 3, 1-am...		Lus10007249 [exp]	0	1
AT1G19250		FMO1	flavin-dependent monooxygenase...		Lus10008454 [exp]	1.0	0.8543
					Lus10003442 [exp]	4.7	0.7734
					Lus10019938 [exp]	5.1	0.7657
AT3G20800			Cell differentiation, Rcd1-lik...		Lus10015136 [exp]	6.9	0.8005
					Lus10015682 [exp]	9.0	0.7862
AT4G34540			NmrA-like negative transcripti...		Lus10012146 [exp]	10.4	0.7862
					Lus10027667 [exp]	11.6	0.7862
AT4G13420		HAK5, ATHAK5	high affinity K+ transporter 5...		Lus10005194 [exp]	12.7	0.7862
AT4G18340			Glycosyl hydrolase superfamily...		Lus10031034 [exp]	13.7	0.7862
					Lus10032828 [exp]	14.7	0.7862

Compare expression of checked genes

Lus10007249 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.