Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15140 385 / 2e-131 Galactose mutarotase-like superfamily protein (.1) AT3G47800 373 / 2e-128 Galactose mutarotase-like superfamily protein (.1) AT3G17940 303 / 3e-101 Galactose mutarotase-like superfamily protein (.1) AT3G01260 244 / 2e-77 Galactose mutarotase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015365 [exp] 650 / 0 AT5G15140 403 / 7e-138 Galactose mutarotase-like superfamily protein (.1) Lus10005251 [exp] 537 / 0 AT5G15140 370 / 2e-126 Galactose mutarotase-like superfamily protein (.1) Lus10030673 [exp] 510 / 3e-180 AT5G15140 358 / 1e-118 Galactose mutarotase-like superfamily protein (.1) Lus10023611 [exp] 367 / 4e-126 AT3G47800 462 / 5e-164 Galactose mutarotase-like superfamily protein (.1) Lus10010976 [exp] 300 / 4e-100 AT3G17940 497 / 4e-178 Galactose mutarotase-like superfamily protein (.1) Lus10000452 [exp] 261 / 3e-85 AT3G17940 436 / 1e-154 Galactose mutarotase-like superfamily protein (.1) Lus10026181 [exp] 256 / 8e-83 AT3G17940 500 / 3e-179 Galactose mutarotase-like superfamily protein (.1) Lus10024242 [exp] 119 / 3e-32 AT3G47800 155 / 3e-46 Galactose mutarotase-like superfamily protein (.1) Lus10042485 [exp] 59 / 2e-10 AT3G17940 113 / 2e-31 Galactose mutarotase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G129700 [exp] 448 / 3e-158 AT3G47800 414 / 5e-145 Galactose mutarotase-like superfamily protein (.1) Potri.017G080200 [exp] 437 / 1e-153 AT3G47800 406 / 9e-142 Galactose mutarotase-like superfamily protein (.1) Potri.017G080100 [exp] 430 / 6e-151 AT3G47800 397 / 3e-138 Galactose mutarotase-like superfamily protein (.1) Potri.017G080000 [exp] 415 / 4e-145 AT5G15140 432 / 3e-150 Galactose mutarotase-like superfamily protein (.1) Potri.012G128800 [exp] 381 / 5e-132 AT3G47800 459 / 1e-162 Galactose mutarotase-like superfamily protein (.1) Potri.012G045875 [exp] 315 / 4e-106 AT3G17940 555 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.017G129300 [exp] 306 / 4e-102 AT3G17940 496 / 1e-177 Galactose mutarotase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [flax] [poplar] Gal_mutarotase PF01263 [flax] [poplar] Aldose_epim Aldose 1-epimerase
Representative CDS sequence Show only first row Show all	>Lus10007251 pacid=23165706 polypeptide=Lus10007251 locus=Lus10007251.g ID=Lus10007251.BGIv1.0 annot-version=v1.0 ATGGCCAAGTTTGTAGTGATGCTTATGATTATGCTTCTTCTTCTTCTTGTGTGTCTGAGTGTTATTGGTTCTGGGTCGTCAGTGGAAGAGCAGATTGGGA GTTACGAGCTGAAGAAAGGGAACATGTCTCTCAAACTCACCAACTATGGTGCCCATATGATGTCCTTCATTCTACCTGACAAATTTGGGAAGTTGAACGA TGTGATTCTTGGATATGACACTGCTGAGGCGTACAAGAATGACACAACGAACTTTGGAGCCACAGTTGGAAGAGTTGCAAATAGAATTGGGGGAGCTCAA TTCAGTCTCAATGGAACTCTCTACAAGTTGATACCCAACGAAGGAAACAACATTCTTCATGGTGGTCCACTTGGATTTGGAAAAGTTGTATGGAAAGTGA AAGAGTACCAACCCAATGGCCCTAAACCTTACATAGTTTTCCTATACCAAAGCCCAGACGGTGATCAAGGATTCCCGGGCGATGTAGTAGCCAACGTGAA GTACACACTTCTGGAGTACAACCAGCTGAGCATCAAACTGAAAGCCAGAGCATTGAACAAAGCAACTCCGGTGAATCTAGCCAACCACGCTTACTGGAAC CTCGGCGGGCACGACAGTGGAGACATACTGTCAGAAGAGCTTCAAATATTGGCTTCTCATTACACCCCTGTCGATAACCAGCTCATCCCAACTGGCAAAA TAGATTCGGTAGTGGGAACGCCCTATGATTTCACGACGCCGAAATCAGTTGGGAGCAGAATCGGCCAGCTGAAACTTGGGTATGATATCAACTACGCGCT CGATGCGAGCCCCATGCACAGAAATGGCAACAAAAGGGGGATGAGGAAAGCTGCGTTTGTTCACGACAGGAAATCGGGTAGAGTGATGGAGTTGTTCACG AATCAGCCAGGGGTACAGCTGTATACCAGCGGCCAGCTCGGCGACACAAAGGGGAAAGGTGGAGTGGTGTACAAGAAACATGGTGGTCTTTGTTTGGAGA CTCAAGGCTTCCCTGACGCTGTTAATCATCCAAACTTCCCTTCAACAATTGTAACTCCGTCCAGCCCTTATGATCACCAAATGCTGCTTAGGTTTTCTAC TTCTTAA
AA sequence Show only first row Show all	>Lus10007251 pacid=23165706 polypeptide=Lus10007251 locus=Lus10007251.g ID=Lus10007251.BGIv1.0 annot-version=v1.0 MAKFVVMLMIMLLLLLVCLSVIGSGSSVEEQIGSYELKKGNMSLKLTNYGAHMMSFILPDKFGKLNDVILGYDTAEAYKNDTTNFGATVGRVANRIGGAQ FSLNGTLYKLIPNEGNNILHGGPLGFGKVVWKVKEYQPNGPKPYIVFLYQSPDGDQGFPGDVVANVKYTLLEYNQLSIKLKARALNKATPVNLANHAYWN LGGHDSGDILSEELQILASHYTPVDNQLIPTGKIDSVVGTPYDFTTPKSVGSRIGQLKLGYDINYALDASPMHRNGNKRGMRKAAFVHDRKSGRVMELFT NQPGVQLYTSGQLGDTKGKGGVVYKKHGGLCLETQGFPDAVNHPNFPSTIVTPSSPYDHQMLLRFSTS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15140			Galactose mutarotase-like supe...		Lus10007251 [exp]	0	1
AT5G19855		AtRbcX2	homologue of cyanobacterial Rb...		Lus10009941 [exp]	8.1	0.8611
AT4G37470			alpha/beta-Hydrolases superfam...		Lus10015633 [exp]	11.1	0.8614
					Lus10003479 [exp]	14.3	0.8302
AT1G15140			FAD/NAD(P)-binding oxidoreduct...		Lus10013488 [exp]	17.7	0.8391
AT3G17800			Protein of unknown function (D...		Lus10017989 [exp]	21.0	0.8529
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10011606 [exp]	23.9	0.8377
AT1G63440		HMA5	heavy metal atpase 5 (.1)		Lus10031273 [exp]	24.0	0.8426
AT1G32500		ABCI7, ATNAP6	ATP-binding cassette I7, non-i...		Lus10010168 [exp]	33.2	0.8559
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Lus10036224 [exp]	47.2	0.7889
AT5G04830			Nuclear transport factor 2 (NT...		Lus10008971 [exp]	47.5	0.8018

Compare expression of checked genes

Lus10007251 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.