Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55160 937 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015366 [exp] 1848 / 0 AT3G55160 2264 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G128601 [exp] 1179 / 0 AT3G55160 2400 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10350 [flax] [poplar] DUF2428 Putative death-receptor fusion protein (DUF2428)
Representative CDS sequence Show only first row Show all	>Lus10007252 pacid=23165695 polypeptide=Lus10007252 locus=Lus10007252.g ID=Lus10007252.BGIv1.0 annot-version=v1.0 ATGGAAAGAACTGTGGTGAAGGGACAGACTGTGGATGATCTTTTAAGGAGAAGCGCTGGGATGCCTGCAGCCTTTATTGCCCTTTTCCTTTCAGAGCCAG AAGGTTCACCAAAGAAGCTTCTCCCACGAGCTCTACGATGGCTAATTGATGTTGCGAATGGCTCTTTGCTAAGAGTAAATGACCCAGATTCCAGCAGGTT TTCATCCTCAAGTTCAGATCAAGACCCTGATTCGTTGCTTCAAAATGAGACCAGTGTGATGGAAAAGGCCTCAAAAATCCGAGATGAGGGTGTAGTTCCA ACTGTGCATGCATTTAATGCTCTTAGAGCTGCTTTCAACGATACAAATTTGGCTACTGATACATCTGGGTTTGCTGCAGAGGCTTTAGTTGTTTCAGTTC GTTCTTTTTCTTCTCCATTCTGGGAGATAAGGGATGCAGCATGTTTAGCATATACTGCCTTACTACGGCGTATGGTTGGATTCTTAAATGTCCTGAAAAG GGAGTCTGCACGCCGTGCCTTAACTGGCCTGGAGTTTTTTCACCGGTACCCTTTACTGCATCCATTTTTTCACAAGGAACTAAAAGTTGCAACTGATCTG CTTGAAGATACCAAGCCCGGGCATTCAGGATTGAACCTGGAAAAAGTTGTCCATCCAAGCTTGTGTCCTATGTTAATTCTTCTATCAAGGCTCAAACCTT CCGCTATTTCAAGTGAGAAGGGCGACAATCTTGATCCTTTCTTGTTTATGCCATTCATCAGGAAATGCTCTACCCAAAGCAATCTGCGAGTCCGTGTTCT TGCTGCGAAAGCTTTAAATGGGCTAGTATCTAATGAAAAACTTGCATCTACCCTCCTGCTTATTGCTTCTGAGCTACCATTCTCAGAGAGTCAAATCAGA ACTACTTCTTCGGCAAGCATAATAAATGCAACTGATGACGTCCATTGTGCTTCTTTCAATTCAATACACGGGATATTATTGCAAATCAGTTCTCTTCTTG ATGCGAATTGCAGAGATTTGGCTGATTTTGGTAAGAGAGAACAAATTCTTGGTGATTTGTTACAGATTCTTGTGGAACGCTCATGGATTGCTTGCCGTAA ACAGTGCTCTTGCCCCATTTTGAATACATCTTTCCTTAGGGTGGTGACTCACATGCTCAGTATTGCCAGGACAGGGTATGTCAGTGTTCATTTTCATATG ATCCGCAAGCTGCTGGTGGAATTATCTACAGGATGTTTAGATGTCGAAGATTCATATGGAATGATGTTTTATGATCCAACGGTAGGTGAGCTTCGTGAAC AAGCAACAATCTCTTATTTCAGCTGCATTCTTCAGACATCTAAAGATGAAACTGAAGGCTTTATTAAGGCACCAAAAAGGTCTTCATTGCCTGTAGTAAA TTCGCTGAACCTTCCAGAAACAGTGGCCACCATTATAGGACTCCAAGAAAGACTGACTCTTTCCCTGGAAGATTCTGCATATGAAGTTCGACTTGCAACA CTGAAATGGTTGCTAAAGTTCCTAAGGTCAACCGATTACAGCTCCTCCGGTGCTCATAATATTTTATCCGAAGAGATTAAAACAATTCAGCAGTGGACTA GATCAAGCCTTCAGATAACCATGACGAACCTTTTAGACTCTGAGAAGAACCACAGATGTATATACTACATCCTCAGGGTTATTTTCACCTGGAACATACT GTTTAAGGAGACAAGGGACCAAGATGTTGTTAGCACTGAATATGTTGGTCAGTTGGATCTCTGCTGTGTATCCGAATTTTGGGATAAATTGTTGTCCTTA TACAAGGTCACGAGACATTCAAAGACCAGAGAGAAACTCATCTGTTGCATGGCTGTATGTGTGAAACGGTTTGCCAGTTTACTGACGAGCTTTGCTCTTT CCGGTGAGCAGAAGAAAATTGTAGAACCCACCAAACCAAATCGATTGGAGGACCCAGCATATTTGATTGAATGCATCACCTTTTTTGTTGGGTTGATCAA GGAGCATGGTTCATCATCTGAACCAGTAAACATGCGAATCGCTGTAGCTGAATCTGTAATAGCATCGGGTTTGCTAGAACAAGCTGAATTGATTGGTTCA TCTGTATCCAACTCCAAAGTACCATCTGATTGTCTAGGTGCCACGTATGCACTTCAAGTTCTAGAGATATGGTTTGCTAGCATCCAATTGCTGGAGGATG AAGACGATGGGATCAGGGAAAAAGTTGCCAGAAATGTCCAGAAATGCTTTCATCGCAAGGTGGATGAAAGCGGTTCTCATGCTAGTGTAGTCGCAACAAC CCAAGTGGAGAGAGTTATTGAATTAAGTTTTTTGCATCTGTCTCTGATCTTTGGTCACTGGATTTCTTACTTAGATTACCTTACACAGTGGGTATTTGAC ATAGCAACCTCGGTGGTTTCGACAAGGGATCTTGTGAGAAGAGTTTTTGACAAGGAGATTGATAACCATCACGAAGAGAAGTTGTTGATCTGTCAGATAT GTTGCTTCCATTTGGAGAAGCTTTCAGTTTTAAACTCATCATCTGCTCAAAATGCCAACAACCATGAGTTGAAGAATTACTTGTACTCAAGGAGAAGAAA ATTTGCTGAGCAACTGAAGTCATATGCTGATGACTTTGTTGAAAAACTCGGAGGAATTGACTGGATAGGAGGTGCAGGTAACCACAAGGATGCTTTCCTA CCAGTATATACAAACTTGCTTGGGTTTTATGCGCTATCAAACTGCATCTTGAAGGGAGAAGGCGTGGACGTTACGAGTCTATTAGTTGATGTCGATGATC TCGGGAAAAGTATCAACCTTTTCTTCAGTAACCCATTGATCTATAATCTCTTTTCTCTAGTGGTGAAGTCGCATGAGAAGAAGAGTGTAATCTCTTCATG TAAAGTAATAGAAGATGCACTAAATGATGGTTTTAGTCCATATTTTCTGCTTAGGTGA
AA sequence Show only first row Show all	>Lus10007252 pacid=23165695 polypeptide=Lus10007252 locus=Lus10007252.g ID=Lus10007252.BGIv1.0 annot-version=v1.0 MERTVVKGQTVDDLLRRSAGMPAAFIALFLSEPEGSPKKLLPRALRWLIDVANGSLLRVNDPDSSRFSSSSSDQDPDSLLQNETSVMEKASKIRDEGVVP TVHAFNALRAAFNDTNLATDTSGFAAEALVVSVRSFSSPFWEIRDAACLAYTALLRRMVGFLNVLKRESARRALTGLEFFHRYPLLHPFFHKELKVATDL LEDTKPGHSGLNLEKVVHPSLCPMLILLSRLKPSAISSEKGDNLDPFLFMPFIRKCSTQSNLRVRVLAAKALNGLVSNEKLASTLLLIASELPFSESQIR TTSSASIINATDDVHCASFNSIHGILLQISSLLDANCRDLADFGKREQILGDLLQILVERSWIACRKQCSCPILNTSFLRVVTHMLSIARTGYVSVHFHM IRKLLVELSTGCLDVEDSYGMMFYDPTVGELREQATISYFSCILQTSKDETEGFIKAPKRSSLPVVNSLNLPETVATIIGLQERLTLSLEDSAYEVRLAT LKWLLKFLRSTDYSSSGAHNILSEEIKTIQQWTRSSLQITMTNLLDSEKNHRCIYYILRVIFTWNILFKETRDQDVVSTEYVGQLDLCCVSEFWDKLLSL YKVTRHSKTREKLICCMAVCVKRFASLLTSFALSGEQKKIVEPTKPNRLEDPAYLIECITFFVGLIKEHGSSSEPVNMRIAVAESVIASGLLEQAELIGS SVSNSKVPSDCLGATYALQVLEIWFASIQLLEDEDDGIREKVARNVQKCFHRKVDESGSHASVVATTQVERVIELSFLHLSLIFGHWISYLDYLTQWVFD IATSVVSTRDLVRRVFDKEIDNHHEEKLLICQICCFHLEKLSVLNSSSAQNANNHELKNYLYSRRRKFAEQLKSYADDFVEKLGGIDWIGGAGNHKDAFL PVYTNLLGFYALSNCILKGEGVDVTSLLVDVDDLGKSINLFFSNPLIYNLFSLVVKSHEKKSVISSCKVIEDALNDGFSPYFLLR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55160			unknown protein		Lus10007252 [exp]	0	1
AT2G41620			Nucleoporin interacting compon...		Lus10039624 [exp]	1.0	0.9648
AT1G09770	MYB	ATCDC5, AtMYBCD...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10034133 [exp]	3.9	0.9315
AT2G38770		EMB2765	EMBRYO DEFECTIVE 2765, P-loop ...		Lus10016352 [exp]	4.5	0.9501
AT4G19610			nucleotide binding;nucleic aci...		Lus10040636 [exp]	4.7	0.9354
AT4G40000			S-adenosyl-L-methionine-depend...		Lus10026840 [exp]	5.5	0.9411
AT2G20000		CDC27b, HBT	HOBBIT, CDC27 family protein ...		Lus10034945 [exp]	5.9	0.9375
AT5G51200		EMB3142	EMBRYO DEFECTIVE 3142, Protein...		Lus10005726 [exp]	7.9	0.9483
AT4G28200			unknown protein		Lus10004616 [exp]	8.2	0.9294
AT2G22400			S-adenosyl-L-methionine-depend...		Lus10020217 [exp]	10.4	0.9387
AT3G55160			unknown protein		Lus10007253 [exp]	12.2	0.9423

Compare expression of checked genes

Lus10007252 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.