Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55160 1282 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015366 [exp] 2290 / 0 AT3G55160 2264 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G128601 [exp] 1541 / 0 AT3G55160 2400 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10350 [flax] [poplar] DUF2428 Putative death-receptor fusion protein (DUF2428)
Representative CDS sequence Show only first row Show all	>Lus10007253 pacid=23165708 polypeptide=Lus10007253 locus=Lus10007253.g ID=Lus10007253.BGIv1.0 annot-version=v1.0 ATGTCGGCGAAATGGCGGGCACTGCAGCACCGTCACCGTTACACATACAGTGCCGTGATTTTCCCACATTCATATGCAGACATCTTATCGCACTCTCTCT TAGCATCCAATCCCAAGTGTTCAGCTTTCGTGGAAGATCTCAATAAGCTAGTTTCGCTTAATTCCATCTACACACAGATAGCTCATGTCAAGAGCTTGGC TTCTTCCTTCTCCAACTTGGTAAGAGATATAGAAACTGATGATTCGCTTTTGGAATTGGCATGCCGGTTTTACTTGGAAGTCTTGTTCATGGAGAACTCC CCTCCCCTGCACCGAACTTTGGTCTCTGGTTTGGCGCGAGTTGGCAACTCTGAGAGGCAGTCTTTAATCCACAACTGTTTCGCAGAGCTTTGCAAGGGGT ACGGAAGCGACAAAGGGAAAGGGTCACTGAAGAAGAGGTTCTGCTTATCCAAGGTTGCGTTATCGTTCATGGGCATGCCCAAGTTGGGTTATTTGGTGGA TATAATTGAAGATTGTGTCGTTTTGGTTGCCTGGGATGTTGTTATTGGGTTGGAAAGTGTGGTTTCGGAGACTGAAAAGTTGGCAAGGCCGTCTCCTATT GTTCTGGAGCAATGCCAGGATGCGTTGTCTTGTTTGTACTACTTGCTTCAGCGGTTCCCGGACAAACTGAACCATTCTAATCATGTTGATGCCGATGACA ATTTAAGCGTTTTGGAGAGGGTATTTAAGGTTTTGATAAGTGTGCTCAAGTCGTTGGCTTTTACTAGTGATTGTTTAGTGGCGGCTGGTGTGAGTTTGTG TGCTGCTTTGCAAGCGTCTCTTAGTGCTGAGGAGCTTGGCTTGCTCATATTTCAAGGTATTCTTAATCCTATGACTTTAGGTTCTTTGATCGGTAATCAC GCTGATGAAGAGTTTAGGGATGCCGTTCTGAAGGTTCCTTACAGAGGAAACTTTTGTCTTGAAATACGTAATTTATCTCTTCTGAGTAGACTGTGCTTGA TCAGAGGGATTCTCACTGCTGTCTCGAGAACAGTACTCAATAGGCGGTTTGTCGTGAAAACCAGTGACGCAGATCAACTTGTGGGAAATGAAAACTCCGG TACATCTGTTAAGGCCATCTTGTATGATGGGATCTTGTTGGAGCTTTGTAACTACTGCGAGAACCCTACAGACAGCCATTTTAATTTCCATGCGCTGACA GTGATGCAAATTTGTTTGCAGCAGATGAAGACTTCATTATTGACTTGTCTTACTGAACTATTGGACGGCTACAATCCAATTCCAGATGAAGTGGAGACTC GAATACTCAGGATAGTCTGGAATAACTTGGAAGATCCCTTGAGTCAGACAGTAAAACAAGTCCACCTAATGTTCGATCTTTTCATAGATATTCAATCAAC GCTTCATTTGGGAGAGGATAGCAAGCGAATCAAGATATTTCTTGAAAATATTACATTGCATCTCCTACATATGGGTCCCCGTTGCAAGGGAAGATATGCT CCATTGGCTTCACTGACTAAGAGACTGGGATCACGAGCTTTACTGGATATGAATCCTGACTTGATGTATGAAACAGCACAAGCATATGTAGACGATGATG TGTGCTGTGCAGTGACATCTTTCTTAAAATGTTTTCTTGAAAACTTGAGGGATGAATGTTGGAGCAATAATGGTGTCGAGACAGGCTATGAAATTTATAG GAGATATTCGTTGCCGCCATTTCTTTGTGGTCTAGCATCCGGGATATCAAAGCTTCGGTCAAATCTGAACACTTATGCCCTGCCTGTTCTACTTGAAGTT GATGTGGATAGCATATTTCCTATGCTTTCTTTTATCTCAATCGGGCTAGACAGCAAGGAAAATGGACTTTCACCACATAAGATTGCTGTTCAAGATTCAG AACTAGGAATCGAAGAACATGTGGCTGTCTTAATCTCTTTGCTTAAGGTATCCCGTTCTGTTGCATTGCTGGATGGAGATATTGATTTGTCTGATGATTC GGGTGCTGTTCCACTAGATGGCGAAAAGGGAGCAGAAATTGTGAATTCTAGTGGTATTGTATGCATAAAAGGGGTCATGGTTAAGGTCCCTGTTGAGTGG CTAGTGATGGCTTTGACTCATGTTGACGAGTCACTTCGAGTGGATGCAGCCGAGACTCTTTTTTTGAATCCTAAGACATCTAGTCTTCCTTCTCATTTGG AAATCTCTCTCCTTAAAGAAGCCGTGCCATTCAACATGAGGAGTTGCTCAACAGGTTTCCAGATGAAGTGGTCAAGCCTGTTCAGAAAGTTCTTTTCTCG GGTCCGTACCGCATTGGAGAGACAATTTAAGCAGGGTGACTGGAAACCATCAGCTAATTGCAAATTAAATGAACCATGTTCAAATGGCAAAGCTGAAGTT AAAAGGGCAGAGGATCTTTTTAATTTTATGAGATGGTTGGGCTGTTTTCTATTTTATTCGTGCTATCCTTCTGCCCCTTACAGAAGAAAAATAATGGCCA TGGAGCTGATACAGATTATGCTCAATGTATGGTCTATCAAATCTTCTCAGGATGAGTGTGAAAACTACCTCTCTCCCTACAGTAAGGCTATCACTTCACC TGATTCAACCTTGTTGTTAGTTGGATCTGTCATTGATAGTTGGGATAGGCTGAGAGAAAGTTCTTTCCGTATTTTGCTTCATTTCCCTACTCCACTTCCT GGAGTTGATTCTGCAGAAATGGTCCAGAAACTAATAGTTTGGGCCCAGAGATTAGTTTGCAGTCCACGAGTGAGAGAAAGTGATGCAGGTTCACTAACTC TAAGGCTTATATTTCAAAAGTATGTCTTAGAACTTGGATGGGTTGTTCGAGCTTCTGTTAATGTTGTTTGTCTTGAGTCACCATATCAAGTATCCAATGG GATGGTCCAGATGGTTGAAACTACAACTCCTGTTGTAGAGTATGTCAAATCATTGATTGATTGGTTGGAAGTTGCCGTGGAAGAAGGGGAGAAGGATCTC TATGAAGCTTGTAAGAACAGTTTTGTTCATGGAATTTTGCTTGCATTGCGGTATACTTTTGAGGAACTGGATTGGAATTCTAATGCAGTCATGTCTAATG GCTTAAAGATGAGGTCTGGATTGGAGAAGCTATTGGATCTGGTTATGCGAATCACGCGCTTGGCACTTGGGGTGGTATCTGCTGACGCCTGGTATCTGCC TGACGGGGATGAATTAGTTGATGAAGATGCGTACTTGGTGAGTGAAATGGATATGAGAGAACTCTCATCTGAACAAGGGGTCGATTCAAAATCTCACGAT GAAAGCAGGATGTCTCAGCAGATTGTTATGGTTGGATGCTGGCTGGCAATGAAAGAGGTGAGTCTTCTTCTTGGGACTGTCATAAGAAAAGTTCCTCTAC CTACAAACAGTTGCCCAGATCTACAGAAACTAGCCCAATTTCCAGATGCTGTTAACCTTGGAAAATCCAATGCTATTCTTGATATTGAACGGCTTGAGCA AATGGGCAACCACTTCTTGGAAGTCCTTCTGAAGATGAAGCATAATGGAGCAATTGACAAGACAAGGGCTGGATTTACTGCTCTTTGCAACCGTCTGCTC TGCTCTAATGATCCAGAGTAA
AA sequence Show only first row Show all	>Lus10007253 pacid=23165708 polypeptide=Lus10007253 locus=Lus10007253.g ID=Lus10007253.BGIv1.0 annot-version=v1.0 MSAKWRALQHRHRYTYSAVIFPHSYADILSHSLLASNPKCSAFVEDLNKLVSLNSIYTQIAHVKSLASSFSNLVRDIETDDSLLELACRFYLEVLFMENS PPLHRTLVSGLARVGNSERQSLIHNCFAELCKGYGSDKGKGSLKKRFCLSKVALSFMGMPKLGYLVDIIEDCVVLVAWDVVIGLESVVSETEKLARPSPI VLEQCQDALSCLYYLLQRFPDKLNHSNHVDADDNLSVLERVFKVLISVLKSLAFTSDCLVAAGVSLCAALQASLSAEELGLLIFQGILNPMTLGSLIGNH ADEEFRDAVLKVPYRGNFCLEIRNLSLLSRLCLIRGILTAVSRTVLNRRFVVKTSDADQLVGNENSGTSVKAILYDGILLELCNYCENPTDSHFNFHALT VMQICLQQMKTSLLTCLTELLDGYNPIPDEVETRILRIVWNNLEDPLSQTVKQVHLMFDLFIDIQSTLHLGEDSKRIKIFLENITLHLLHMGPRCKGRYA PLASLTKRLGSRALLDMNPDLMYETAQAYVDDDVCCAVTSFLKCFLENLRDECWSNNGVETGYEIYRRYSLPPFLCGLASGISKLRSNLNTYALPVLLEV DVDSIFPMLSFISIGLDSKENGLSPHKIAVQDSELGIEEHVAVLISLLKVSRSVALLDGDIDLSDDSGAVPLDGEKGAEIVNSSGIVCIKGVMVKVPVEW LVMALTHVDESLRVDAAETLFLNPKTSSLPSHLEISLLKEAVPFNMRSCSTGFQMKWSSLFRKFFSRVRTALERQFKQGDWKPSANCKLNEPCSNGKAEV KRAEDLFNFMRWLGCFLFYSCYPSAPYRRKIMAMELIQIMLNVWSIKSSQDECENYLSPYSKAITSPDSTLLLVGSVIDSWDRLRESSFRILLHFPTPLP GVDSAEMVQKLIVWAQRLVCSPRVRESDAGSLTLRLIFQKYVLELGWVVRASVNVVCLESPYQVSNGMVQMVETTTPVVEYVKSLIDWLEVAVEEGEKDL YEACKNSFVHGILLALRYTFEELDWNSNAVMSNGLKMRSGLEKLLDLVMRITRLALGVVSADAWYLPDGDELVDEDAYLVSEMDMRELSSEQGVDSKSHD ESRMSQQIVMVGCWLAMKEVSLLLGTVIRKVPLPTNSCPDLQKLAQFPDAVNLGKSNAILDIERLEQMGNHFLEVLLKMKHNGAIDKTRAGFTALCNRLL CSNDPE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55160			unknown protein		Lus10007253 [exp]	0	1
AT4G27010		EMB2788	EMBRYO DEFECTIVE 2788, unknown...		Lus10041554 [exp]	1.0	0.9838
AT2G13540		ENS, CBP80, ABH...	ENSALADA, CAP-BINDING PROTEIN ...		Lus10019032 [exp]	1.4	0.9760
AT5G02950			Tudor/PWWP/MBT superfamily pro...		Lus10023486 [exp]	2.0	0.9735
AT5G42950			GYF domain-containing protein ...		Lus10032720 [exp]	2.6	0.9717
AT1G67120			ATPases;nucleotide binding;ATP...		Lus10006876 [exp]	3.0	0.9737
AT2G40030		NRPE1, DMS5, AT...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10016333 [exp]	3.6	0.9602
AT2G24430	NAC	ANAC039, ANAC03...	Arabidopsis NAC domain contain...		Lus10004531 [exp]	4.0	0.9691
AT5G61990			Pentatricopeptide repeat (PPR)...		Lus10016727 [exp]	4.2	0.9673
AT3G16890		PPR40	pentatricopeptide (PPR) domain...		Lus10032647 [exp]	5.7	0.9442
AT1G64790		ILA	ILITYHIA (.1.2)		Lus10003102 [exp]	5.9	0.9723

Compare expression of checked genes

Lus10007253 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.