Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14340 201 / 4e-59 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G01210 197 / 6e-58 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G17720 119 / 4e-29 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G46870 111 / 7e-27 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G16840 109 / 1e-26 BPA1 binding partner of acd11 1 (.1.2.3) AT1G67950 105 / 7e-25 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT5G32450 104 / 1e-24 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT5G06600 105 / 6e-23 AtUBP12, UBP12 ubiquitin-specific protease 12 (.1.2.3) AT3G11910 104 / 1e-22 AtUBP13, UBP13 ubiquitin-specific protease 13 (.1.2) AT3G58270 83 / 8e-17 Arabidopsis phospholipase-like protein (PEARLI 4) with TRAF-like domain (.1), Arabidopsis phospholipase-like protein (PEARLI 4) with TRAF-like domain (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025569 [exp] 280 / 1e-86 AT5G06600 149 / 7e-39 ubiquitin-specific protease 12 (.1.2.3) Lus10017291 [exp] 228 / 4e-67 AT5G06600 100 / 3e-22 ubiquitin-specific protease 12 (.1.2.3) Lus10019772 [exp] 236 / 3e-65 AT5G50400 287 / 2e-84 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10030491 [exp] 212 / 2e-63 AT1G14340 300 / 1e-103 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10012843 [exp] 209 / 3e-62 AT1G14340 301 / 5e-104 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10008326 [exp] 187 / 5e-54 ND / Lus10027235 [exp] 175 / 2e-50 ND / Lus10027030 [exp] 178 / 7e-50 AT5G06600 120 / 8e-30 ubiquitin-specific protease 12 (.1.2.3) Lus10013548 [exp] 171 / 3e-47 AT5G06600 55 / 3e-08 ubiquitin-specific protease 12 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G081400 [exp] 274 / 1e-86 AT1G14340 229 / 3e-75 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.017G081500 [exp] 260 / 1e-81 AT1G14340 239 / 6e-80 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G138400 [exp] 109 / 2e-26 AT4G17720 365 / 2e-127 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.013G055100 [exp] 105 / 6e-25 AT5G32450 389 / 9e-138 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.019G037600 [exp] 103 / 4e-24 AT5G32450 400 / 2e-142 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G198300 [exp] 106 / 3e-23 AT5G06600 1954 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.003G095400 [exp] 100 / 3e-23 AT4G17720 355 / 9e-124 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.016G064100 [exp] 105 / 4e-23 AT5G06600 1943 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.008G012600 [exp] 103 / 2e-22 AT5G06600 1909 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.010G245100 [exp] 102 / 4e-22 AT5G06600 1907 / 0.0 ubiquitin-specific protease 12 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0389 [flax] [poplar] TRAF PF00917 [flax] [poplar] MATH MATH domain
Representative CDS sequence Show only first row Show all	>Lus10007254 pacid=23165711 polypeptide=Lus10007254 locus=Lus10007254.g ID=Lus10007254.BGIv1.0 annot-version=v1.0 ATGGAACCTCAACATGCAACTGGAAAGGGAGCAAGGGGTATCACTGATCCTGTTCCTATCGAGGATGATATCCTTGATATTGACATCATGGAGGCTGGTG CTACTGCTACTATGGAGAAAGACGAAGAGGAGGGGGGAAGATATGTGAGGATGTATGCACGGTTTGGAGCTATCATCACGGCTGTCTATAGGATAGACAA GTTGCACACCTCTTTGATGCCGCCGCCGATGGATTGCCTATGCAGGAAAGTACTCTGTTTCCCAAAGGGAAATGATGTTGATTTCCTGTCCCTGTATCTG GACTTTGCGGATTGGGAAAGCATGGGTGATGGATGGACTAAATACGCTGACTTCAACATTACTCTTGTCAACCAAATCAACCCCACCCGCTCCAGAAAAT TTTGTTCAAAACATGTGTTTAAGGAAGAAGAGGAAGATTGGGGATTCACATCTTTTATTAGTCTCAGCGAGCTTCACAATCGTCGTCAAGGGTTCATCGT TGACGATACCCTCATAGTTAAAGCTCGAGTTTCAACGGAAGTCGGATTATCAAAGGCTGCAGCAGCAGAGGATCAATCAAAAGGTGATTCCACTTCTCCC CCATTATCCACCAAGCTGCAAAGCCTTGACGCTTTTCTTTTCCATGTGCATTGGCTTGGGTTTCAGGTTGCTCGGACCAACACCATCGCGTCTCCCTCCT CCTCAAGTGTTCAATTCACTTCAAAGAATCTAATTGCAGAACTTTCAACTATAGCTAGTATTTGGGGATCTACTTCTTCAGTCGATGGAGTACCAGCTGT ATCGACCACCAATGATGCCAACCATCATGCTTCTGGTGATTTCCCACAGCAAGAAAAGGAAAATCTGCTGGAATTCCTAGATATGTCACTAGAGGCTATC TGCCAGGCCAACCAGTTCGACAATGTACAACAACTTGTGGTGAAAATGGCCGAGCATGCAACTGATCCATTCCAGAAGTCGGTGCTGAAGGGCTTGGTGT CACGCGTGGTTGAGTTTAGGAACACCGTCCCGAGATCTTTGTCCATGATTGAAAGTTCCCACGAGGTTGAAACTTCGTCAGCACAGGGGAGGAAGGAGCT GGAGGGGAGCCTTGTTCAGCGACAGAAGCAACTTGCATTCCTGGAGTCTGAAGTTTCCAGAATCGAGGAAGAAGTGATGAAGGTGGAGGCAGAAATGCAG CTGTTAGGTGTTCTTAAACACAAACTCTTTCAAGAGAAGAGCTTAACAGTATCCGAAATGGAAGTGGCCAACAGTGAGGCTTCCAGGGAACTGGGGGAGC TGAAGACTAAACACAGAGAACACAAGCAAGCTAAGGAGAATCGGCTGAGAGCCAAAGAGAGACTGGCTCAATCAAATGCAAGTTGGAAGCTTTTCAAGGA AAGCTTGGGAATGCTGCTCGGAGCTTTCTGCCTCTTGACTAGAGTTCTTCTTCCTCTTCGTCTTCTTCTTCTTGATGGATTGATTAACCAGTCAGTCATT CTCAAAAGGGTCGCTTTGGTCGACTTCAATTTCTCTACCATCTGCAGCAACATGTATCCTAGCGGATATACCATTGAAGTTACTAGCTTATCTCATATAG TAACGGACAAGGATGTCCGCGATTTTTTCGCTCACTGTGGTGCGATTGAGCACATTGAGATCATCAGGTCCGGCGAATATGCTTGCACAGCCTATGTTAC ATTTAGAGATGCCTATGCTATTCAAACTGCCATCCTCCTGAGTGGAGCTACGATTCTGGATCAACGGGTATGCATTTCAGTATGGGGAACCCACATAGAT GAATCTAATCCCTGGAACACTCCTTCATGGAAAGCTGGTTATGAGGAACATCATGCGAATCACTTAGCTTCAACCCCTGGAGAAGCGGTAACGGTGGCTC AAGAAGTTGTGAAAACGATGCTGGCAAAAGGATACATCTTGGGGAAAGACGCGCTGGTGAAGGCCAAAGCTCTGGACGAATCTCATAAGGTTTCAGCTTC CGCAGCAGCCAAGGTAGCAGAACTGAGCAGTAGAATTGGACTGACAGAGTCGATACAATCAGGGATGGAAACTGCAAAATTCATAGACGAGAAATACCAC GTTTCGGATATAACGAAAACAGCAGTGTTGTACACGGGAGCAGCAGCAGTAACTGCAGCTACCATTACAGGAAAAAGCGCTGCAGCGGCTGCCAACGCAG TAGTGAACAGCAGTTACTTTGCCAAAGGAGCAGTGTGGATTTCTGATGTTTTGACGCGGGCAGCCCATGCTACCGCAGAATTTGGACATAAAAAAGCCAA TGAATAG
AA sequence Show only first row Show all	>Lus10007254 pacid=23165711 polypeptide=Lus10007254 locus=Lus10007254.g ID=Lus10007254.BGIv1.0 annot-version=v1.0 MEPQHATGKGARGITDPVPIEDDILDIDIMEAGATATMEKDEEEGGRYVRMYARFGAIITAVYRIDKLHTSLMPPPMDCLCRKVLCFPKGNDVDFLSLYL DFADWESMGDGWTKYADFNITLVNQINPTRSRKFCSKHVFKEEEEDWGFTSFISLSELHNRRQGFIVDDTLIVKARVSTEVGLSKAAAAEDQSKGDSTSP PLSTKLQSLDAFLFHVHWLGFQVARTNTIASPSSSSVQFTSKNLIAELSTIASIWGSTSSVDGVPAVSTTNDANHHASGDFPQQEKENLLEFLDMSLEAI CQANQFDNVQQLVVKMAEHATDPFQKSVLKGLVSRVVEFRNTVPRSLSMIESSHEVETSSAQGRKELEGSLVQRQKQLAFLESEVSRIEEEVMKVEAEMQ LLGVLKHKLFQEKSLTVSEMEVANSEASRELGELKTKHREHKQAKENRLRAKERLAQSNASWKLFKESLGMLLGAFCLLTRVLLPLRLLLLDGLINQSVI LKRVALVDFNFSTICSNMYPSGYTIEVTSLSHIVTDKDVRDFFAHCGAIEHIEIIRSGEYACTAYVTFRDAYAIQTAILLSGATILDQRVCISVWGTHID ESNPWNTPSWKAGYEEHHANHLASTPGEAVTVAQEVVKTMLAKGYILGKDALVKAKALDESHKVSASAAAKVAELSSRIGLTESIQSGMETAKFIDEKYH VSDITKTAVLYTGAAAVTAATITGKSAAAAANAVVNSSYFAKGAVWISDVLTRAAHATAEFGHKKANE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14340			RNA-binding (RRM/RBD/RNP motif...		Lus10007254 [exp]	0	1
AT3G25530		GR1, GLYR1, GHB...	glyoxylate reductase 1 (.1.2)		Lus10012301 [exp]	1.0	0.8549
AT2G45530			RING/U-box superfamily protein...		Lus10000211 [exp]	4.5	0.8295
AT5G10530			Concanavalin A-like lectin pro...		Lus10033778 [exp]	5.7	0.8197
AT2G33390			unknown protein		Lus10011781 [exp]	6.0	0.7950
AT1G53050			Protein kinase superfamily pro...		Lus10033684 [exp]	11.8	0.8115
AT1G55270			Galactose oxidase/kelch repeat...		Lus10043282 [exp]	12.0	0.7381
AT2G28930		APK1B	protein kinase 1B (.1.2.3)		Lus10005462 [exp]	15.2	0.7910
AT1G55310		ATSCL33, SR33, ...	SC35-like splicing factor 33 (...		Lus10013539 [exp]	15.2	0.7889
AT4G24020		NLP7	NIN like protein 7 (.1)		Lus10001810 [exp]	15.5	0.7830
AT2G46080			unknown protein		Lus10005122 [exp]	16.0	0.8113

Compare expression of checked genes

Lus10007254 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.