Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39865 286 / 3e-93 Glutaredoxin family protein (.1) AT3G28850 277 / 3e-89 Glutaredoxin family protein (.1) AT2G41330 165 / 1e-46 Glutaredoxin family protein (.1) AT3G57070 165 / 1e-46 Glutaredoxin family protein (.1) AT5G58530 127 / 9e-34 Glutaredoxin family protein (.1) AT5G13810 124 / 1e-32 Glutaredoxin family protein (.1) AT1G64500 121 / 1e-30 Glutaredoxin family protein (.1) AT1G32760 109 / 6e-27 Glutaredoxin family protein (.1) AT4G10630 107 / 5e-26 Glutaredoxin family protein (.1) AT5G03870 106 / 2e-25 Glutaredoxin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017335 [exp] 375 / 7e-129 AT5G39865 345 / 1e-117 Glutaredoxin family protein (.1) Lus10001669 [exp] 365 / 3e-125 AT5G39865 340 / 1e-115 Glutaredoxin family protein (.1) Lus10018025 [exp] 137 / 2e-36 AT3G57070 293 / 2e-96 Glutaredoxin family protein (.1) Lus10024164 [exp] 129 / 3e-34 AT5G13810 259 / 2e-86 Glutaredoxin family protein (.1) Lus10039537 [exp] 127 / 1e-33 AT5G13810 261 / 4e-87 Glutaredoxin family protein (.1) Lus10033238 [exp] 127 / 6e-33 AT4G10630 297 / 1e-99 Glutaredoxin family protein (.1) Lus10007517 [exp] 124 / 6e-33 AT5G58530 153 / 1e-45 Glutaredoxin family protein (.1) Lus10008270 [exp] 126 / 1e-32 AT4G10630 305 / 7e-103 Glutaredoxin family protein (.1) Lus10042021 [exp] 124 / 9e-32 AT3G57070 252 / 2e-80 Glutaredoxin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G081600 [exp] 343 / 8e-115 AT3G28850 355 / 3e-119 Glutaredoxin family protein (.1) Potri.016G038600 [exp] 162 / 2e-45 AT3G57070 317 / 5e-105 Glutaredoxin family protein (.1) Potri.006G041800 [exp] 162 / 2e-45 AT3G57070 340 / 3e-114 Glutaredoxin family protein (.1) Potri.001G448300 [exp] 140 / 7e-38 AT4G10630 285 / 6e-95 Glutaredoxin family protein (.1) Potri.009G075600 [exp] 129 / 9e-35 AT5G58530 199 / 3e-63 Glutaredoxin family protein (.1) Potri.001G026600 [exp] 127 / 1e-33 AT5G13810 312 / 1e-107 Glutaredoxin family protein (.1) Potri.008G072200 [exp] 126 / 1e-33 AT5G58530 177 / 7e-55 Glutaredoxin family protein (.1) Potri.006G212700 [exp] 129 / 2e-33 AT5G03870 332 / 2e-111 Glutaredoxin family protein (.1) Potri.T125406 [exp] 126 / 2e-33 AT5G13810 294 / 1e-100 Glutaredoxin family protein (.1) Potri.003G198100 [exp] 126 / 2e-33 AT5G13810 294 / 1e-100 Glutaredoxin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00462 [flax] [poplar] Glutaredoxin Glutaredoxin
Representative CDS sequence Show only first row Show all	>Lus10007256 pacid=23165697 polypeptide=Lus10007256 locus=Lus10007256.g ID=Lus10007256.BGIv1.0 annot-version=v1.0 ATGGGTTGTGCTAGTTCAAACCAATCGAAGAAGCGATGCCGGAACTGTCAATCTCCATATTCCCCAATGCCAAGAAGCTACTCGATGCACGTCATTCACC CTCCCCAGCAGAAAGGCGACAACTACCATTTGGTAGCACTGACATCTACCACTCTGGGCTCTCTCCAGCTTGATGATCCTCCTCCTTCCAATTTCGATGA TGGGTTAAACGGGAAGGGAATAGACGAGTTCTCAATGAGTTTGATTGAAGCCAAGACATGGTCAAGGATGATAGAGGACAAGATCCCAAGAATGCCGCCT AACCCTAAAACCCCAAATATGACCCCTCCTGGGGAGCCTGAGACTATCAACACCTGGGAATTAATGGAAGGGCTTGAGGAAGATTTCAGCCCATGCCGAT TTCCCAATCACATTCGAAGTTTGTCTTTTGATGTCACTCGCGATCCCAATTGCTTAGCTTCCGTCGACAGTCCAAACATTAGCCTCGACCAGCAGACGAA TGTAAATGCCTCTTTCTCTTCTCAACTTGATCATATTAAGCCTAATCCAATCTGGGGTGAGCTGTCCGAAGAGGAAGAAGAAGAAGAAGAAGAACCAAAT AAGGGCAAATGTGGGAAGTTTTTGGATCCAAACATCATTTCAGTGTTCAGGAAATCAATGCAGGAGTTGTCTCCTAGCCATCCCTTCTATTTGAAACCAA TCCAAGATGTCGTTGGTAAGGGCAAAGACAGGGTTGTTGTGTACTTCACGAGCTTGCGAGGCGTGAGGAAGACGTACGAGGATTCATGTTGTGTGAGGGT GATCCTGAAAGGGCTAGGGGTTCGAGTGGACGAGAGGGATGTTTCGATGCATTCCGGGTTCAAGGAGGAGTTAAGGCAGTTATTAGGAGGAGGAGGAGAT GGAGGGTTCAGCTTGCCAAGAGTGTTCATTGGTAATAAGTGCATCGGAGGGGCTGACGAAATCCGGCAGATGCACGAGGAAGGCCGGCTAGAGAAGGCCG TGGAAGGTTGCCAAAAGGCGGAGGATGACGGTGGGGGAGAAGGGATGTGTGAGGCTTGTGGAGATGTTAGATTTGTGCCTTGCGAGACTTGTTCAGGGAG TTGTAAGATATACTATGAAGAGGAAGAAGATGAGGATGAGGATGACACAGAAGTTGAAGAGGGGAATGAGATGGTTGATTATGGATTTCAAAGGTGTCCT GATTGCAATGAGAACGGCCTTATTCGATGCCCAATTTGTTGTTTTCCATAA
AA sequence Show only first row Show all	>Lus10007256 pacid=23165697 polypeptide=Lus10007256 locus=Lus10007256.g ID=Lus10007256.BGIv1.0 annot-version=v1.0 MGCASSNQSKKRCRNCQSPYSPMPRSYSMHVIHPPQQKGDNYHLVALTSTTLGSLQLDDPPPSNFDDGLNGKGIDEFSMSLIEAKTWSRMIEDKIPRMPP NPKTPNMTPPGEPETINTWELMEGLEEDFSPCRFPNHIRSLSFDVTRDPNCLASVDSPNISLDQQTNVNASFSSQLDHIKPNPIWGELSEEEEEEEEEPN KGKCGKFLDPNIISVFRKSMQELSPSHPFYLKPIQDVVGKGKDRVVVYFTSLRGVRKTYEDSCCVRVILKGLGVRVDERDVSMHSGFKEELRQLLGGGGD GGFSLPRVFIGNKCIGGADEIRQMHEEGRLEKAVEGCQKAEDDGGGEGMCEACGDVRFVPCETCSGSCKIYYEEEEDEDEDDTEVEEGNEMVDYGFQRCP DCNENGLIRCPICCFP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39865			Glutaredoxin family protein (....		Lus10007256 [exp]	0	1
AT5G06700		TBR	TRICHOME BIREFRINGENCE, Plant ...		Lus10004159 [exp]	3.3	0.8838
AT4G34120		CBSX2, CDCP1, L...	LOSS OF THE TIMING OF ET AND J...		Lus10027885 [exp]	4.2	0.8799
AT3G47520		pNAD-MDH, MDH	plastidic NAD-dependent malate...		Lus10000275 [exp]	8.4	0.8518
AT1G76180		ERD14	EARLY RESPONSE TO DEHYDRATION ...		Lus10021827 [exp]	8.7	0.8755
AT2G26730			Leucine-rich repeat protein ki...		Lus10033065 [exp]	12.6	0.8554
AT1G14020			O-fucosyltransferase family pr...		Lus10026624 [exp]	13.9	0.8710
AT1G51630			O-fucosyltransferase family pr...		Lus10037328 [exp]	15.5	0.8271
AT1G51630			O-fucosyltransferase family pr...		Lus10035749 [exp]	19.7	0.8698
AT4G34490		ATCAP1	cyclase associated protein 1 (...		Lus10026338 [exp]	21.3	0.8610
AT4G23490			Protein of unknown function (D...		Lus10032293 [exp]	23.2	0.8522

Compare expression of checked genes

Lus10007256 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.