Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47020 1210 / 0 unknown protein AT5G11700 829 / 0 unknown protein AT4G32920 783 / 0 glycine-rich protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005497 [exp] 831 / 0 AT5G11700 1842 / 0.0 unknown protein Lus10043045 [exp] 826 / 0 AT5G11700 1537 / 0.0 unknown protein Lus10007461 [exp] 813 / 0 AT5G11700 1835 / 0.0 unknown protein Lus10011144 [exp] 746 / 0 AT5G11700 1470 / 0.0 unknown protein Lus10000229 [exp] 108 / 5e-27 AT4G32920 182 / 5e-54 glycine-rich protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G086200 [exp] 1373 / 0 AT5G47020 1620 / 0.0 unknown protein Potri.001G148300 [exp] 1356 / 0 AT5G47020 1624 / 0.0 unknown protein Potri.006G234500 [exp] 827 / 0 AT5G11700 1793 / 0.0 unknown protein Potri.018G058300 [exp] 805 / 0 AT5G11700 1779 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007257 pacid=23165694 polypeptide=Lus10007257 locus=Lus10007257.g ID=Lus10007257.BGIv1.0 annot-version=v1.0 ATGAAAATTTTAGAGAATCCTGAGGTCTTTGGTGCCTTTAGAGTCGCTGTCAAAATACTGCTCATGTGGAACTCCTCTATTGAAATTGATGGGCGTGGAA ACACTGTTGTTACGGCCTCAATCTTCGAAGTCAGAAATCTGATTGTTCTCAGGGCAAGCTCAGTCATTAGCTCAAATGCAAATTTGGGAGTGTATGGTCA AGGACTATTTAAGCTGACAGGCCAGGGCGATGCTATCAAAGGCCAACGACTTTCCCTGTCTCTCTTCTACAACCTAACTGTTGGGCCGGGTTCTCTACTT CAAGCACCATGGGGTGATGATGCTAGCAGAAGTGTGGTTACTAACTCAATGTGCGAGACTGAGATGTGCCCTGCAGACATTATTTATCCTCCAGATGATT GCCATGTCAACTATACGTTGTCTTTTTCACTTCAAATTTGCCGTGTTGAAGACCTCCTTGTGAATGGTATTGTGAAAGGGAGTATTATCCACATACATCG GGCTAGGACTATTATTATTGATACTGGTGGCTCAATCACTGCATCTGAATTAGGTTGCAGTACAGGTATTGGAAAAGGGAAATACACTCATGGAGCTGGT AGTGGTGCTGGCCATGGGGGACAGGGAGGTTCTGGATATTTCAATGGAATTTTGAGTGATGGTGGCAATGTATATGGTAATGCTGATCTTCCTTGTGAGC TAGGAAGTGGAACTGAGGGGCCTGATCAGTCTTATGGGAATGCGATTGGAGGAGGAATGATTGTGATGGGTTCTACACAATGGCCATTGTTAAAGCTAGA TCTTTATGGGTCTTTAAGTGCTGATGGTCAAAGTTCTCATCAACCGTTAATAGAGAACAATGATTCTTTTACTGGTGGGCTTGGTGGTGCCTCGGGTGGG ACCATCCTTCTTTTCCTTCAGATGCTCGTGCTTGCGGAGAACTCTAATTTATCTGCTCATGGTGGCAATGGTGGCTCTAATGGTGGTGGAGGAGGTGGAG GTGGGAGAGTTCATTTTCACTGGGCTAACTTCGAAACTGGAGAAGAATATATTCCAGTAGCAAGCATAAATGGTACCATTGATAGTCGTGGTGGTGCTGG GACAAATGGTGGTCTCCTTGGTGAAGGAGGTACAGTCACAGGAAAAAGATGCCCGAAAGGGCTATATGGCACATTCTGTGAGGAATGCCCTGTTGGTACC TTCAAAGTGGAGGAGGGTTCTGAGGGAAGTCTTTGTATTCCCTGCTCTCTTAAGGTTCCTCCTGCACGCGCATATTTTGTATATGTGAGAGGAGGAGTAA CTGATTCATCATGTCCATACAAATGCATATCTGATAAATACAGGATGCCAAATTGTTATACTCCTCTTGAAGAGCTTATGTATGCATTTGGAGGCCCTTC TCTATTTGTCTTTCTTCTCTCTTCCGTCGTGGTTCTTGTAGCTCTCTTTTTGAATATATTAAGAATTAGATACATCCGGTCAAGCTCTTATGTTTCAAAT TCAGTCGGCCATCAGAGTCATCATCATTTGCCACATCTACTATCTCTATCTGAGGTGCGGGGGACTAGAGCTGAAGAAACTCAGAGCCACGTTTACAGAA TGTACTTTATGGGCCCCAATACTTTTAGGGAACCGTGGCATCTTCCCTACTGCCCTCCAGATGCTATAATTGATATAGTATATGAGGATGCTTTTAACAG ATTTATTGATGAGATAAACTCTGTTGCTGCATATGATTGGTGGGAAGGTTCAGTACACTGCATACTTTCAGTGCTTGCCTATCCCTGCGCATGGTCATGG AAACAATGGCGGCGTAAAAGTAAAATTCATCGGCTTCAGGAATATGTGAAGTCTGAATATGATCATTCATGTCTCCGTTCTTGCCGTTCACGAGCTTTGT ACAAGGGAATGAAGGTTGGAGCAACTCCAGACTTGATGGTTGCATACATAGATTTTTTCCTAGGCGGTGACGAGAAACGTTTAGACATTGTCTCTATCAT AAAGAAAAGGTTCCCCATGTGTATAATTTTTGGTGGAAATGGTAGCTATATGTCACCCTATGATCTTTACAGTGACACGTTGCTAACCAATCTTCTTGGT CAGCACATCCCTGCCAGTGTCTGGCATCGTCTGGTGTCTGGCTTGAATGCTCAGCTAAGGACAGTGAGGCATGGATCGATTCGTACCGCACTACTTCCCG TCATCGATTGGATAAGAAGCCATGCAAATCCGCAAATTGAATTTCATGGAGCCAAGATAGAGCTTGGATGGTTTCAGGTTACTGCTTCTCGTTACTATCA GCTGGGAATCTTGGTAGTTGCTGGTGGATATTCTTCCCATAATTCTCGGGGAGCAGACAAATCAGATTGGATCAACAGTAGAAAACCTAGGAGTCCCTGG CTGGTTATGCACCAGACCAAGTCGAGTCCTGTGGCTCTACTTAGAGTCCCTGGCTGGGACAACGGCTCGTGTACTAGCAGGCTTCTTCAGCAGCCAATGG ATGAGTTGCCATCAATGAGTGAAGCTTTATCTCGTAAGAAGCTGACTGGTGGAATAAACGGAGGTGTTATTAATGAGGATACTCTGAAATCTTTGGATTA TAGACGAGATTTCCTCTTCCCACTCTCTCTTTTATTGCATAATACAAGACCTGTTGGTCGTCAGGAAACTGTTCAGCTTTTCATTCTTATCCTGCTTATG GCTGATCTTTCCGTCACAGTTCTTACATTGCTTCAGTTCTATTGGATTTCTCTTGGTGCTTTTCTTGCTGTGCTGCTGATACTTCCTCTGTCCCTGCTTT CTCCGATCCCAGCTGGTTTGAATGCCTTATTCAGCAGAGAGCCCAGAAGAGCTTCACTCGCTCGCATATATGCATTATGGAATGCTGCATCTTTATCTAA TCTTGTTGTAGCTTTCATTTGCGGCATCATCCATTATATACTTTTTCTATTAAAGACAGTTGAGAAAGGAAACACTTGGAACATTGGGAGGGAGGATGAT GGATGGTGGGTTTTGCCAACGATCCTGGCACTAATGAAGTCGATTCAAGCTCGAATTGTCGATAGGCACATTGCTAATCTTGAAATGCAGGACTTGTCTC TGTTGTGTCCGGATCCAGATGCTTTTTGGGCGCATGAATCTGGTCCTTGA
AA sequence Show only first row Show all	>Lus10007257 pacid=23165694 polypeptide=Lus10007257 locus=Lus10007257.g ID=Lus10007257.BGIv1.0 annot-version=v1.0 MKILENPEVFGAFRVAVKILLMWNSSIEIDGRGNTVVTASIFEVRNLIVLRASSVISSNANLGVYGQGLFKLTGQGDAIKGQRLSLSLFYNLTVGPGSLL QAPWGDDASRSVVTNSMCETEMCPADIIYPPDDCHVNYTLSFSLQICRVEDLLVNGIVKGSIIHIHRARTIIIDTGGSITASELGCSTGIGKGKYTHGAG SGAGHGGQGGSGYFNGILSDGGNVYGNADLPCELGSGTEGPDQSYGNAIGGGMIVMGSTQWPLLKLDLYGSLSADGQSSHQPLIENNDSFTGGLGGASGG TILLFLQMLVLAENSNLSAHGGNGGSNGGGGGGGGRVHFHWANFETGEEYIPVASINGTIDSRGGAGTNGGLLGEGGTVTGKRCPKGLYGTFCEECPVGT FKVEEGSEGSLCIPCSLKVPPARAYFVYVRGGVTDSSCPYKCISDKYRMPNCYTPLEELMYAFGGPSLFVFLLSSVVVLVALFLNILRIRYIRSSSYVSN SVGHQSHHHLPHLLSLSEVRGTRAEETQSHVYRMYFMGPNTFREPWHLPYCPPDAIIDIVYEDAFNRFIDEINSVAAYDWWEGSVHCILSVLAYPCAWSW KQWRRKSKIHRLQEYVKSEYDHSCLRSCRSRALYKGMKVGATPDLMVAYIDFFLGGDEKRLDIVSIIKKRFPMCIIFGGNGSYMSPYDLYSDTLLTNLLG QHIPASVWHRLVSGLNAQLRTVRHGSIRTALLPVIDWIRSHANPQIEFHGAKIELGWFQVTASRYYQLGILVVAGGYSSHNSRGADKSDWINSRKPRSPW LVMHQTKSSPVALLRVPGWDNGSCTSRLLQQPMDELPSMSEALSRKKLTGGINGGVINEDTLKSLDYRRDFLFPLSLLLHNTRPVGRQETVQLFILILLM ADLSVTVLTLLQFYWISLGAFLAVLLILPLSLLSPIPAGLNALFSREPRRASLARIYALWNAASLSNLVVAFICGIIHYILFLLKTVEKGNTWNIGREDD GWWVLPTILALMKSIQARIVDRHIANLEMQDLSLLCPDPDAFWAHESGP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47020			unknown protein		Lus10007257 [exp]	0	1
AT4G33580		ATBCA5	A. THALIANA BETA CARBONIC ANHY...		Lus10009274 [exp]	13.9	0.8926
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10012041 [exp]	17.7	0.8695
AT1G70620			cyclin-related (.1.2.3)		Lus10026699 [exp]	21.4	0.8472
AT3G27820		ATMDAR4	monodehydroascorbate reductase...		Lus10013079 [exp]	22.2	0.8544
AT4G28540		CKL6, PAPK1	casein kinase I-like 6 (.1)		Lus10022908 [exp]	23.8	0.8879
AT3G04600			Nucleotidylyl transferase supe...		Lus10018331 [exp]	27.6	0.8793
AT5G13760			Plasma-membrane choline transp...		Lus10039585 [exp]	27.7	0.8820
					Lus10039819 [exp]	36.1	0.8608
AT5G54570		BGLU41	beta glucosidase 41 (.1)		Lus10037988 [exp]	36.5	0.8472
AT2G21520			Sec14p-like phosphatidylinosit...		Lus10026356 [exp]	43.6	0.8646

Compare expression of checked genes

Lus10007257 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.