Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47020 170 / 4e-50 unknown protein AT5G11700 110 / 4e-29 unknown protein AT4G32920 99 / 9e-25 glycine-rich protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007461 [exp] 117 / 2e-31 AT5G11700 1835 / 0.0 unknown protein Lus10005497 [exp] 117 / 2e-31 AT5G11700 1842 / 0.0 unknown protein Lus10043045 [exp] 115 / 2e-30 AT5G11700 1537 / 0.0 unknown protein Lus10011144 [exp] 114 / 3e-30 AT5G11700 1470 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G148300 [exp] 159 / 5e-46 AT5G47020 1624 / 0.0 unknown protein Potri.003G086200 [exp] 159 / 6e-46 AT5G47020 1620 / 0.0 unknown protein Potri.006G234500 [exp] 114 / 2e-30 AT5G11700 1793 / 0.0 unknown protein Potri.018G058300 [exp] 112 / 1e-29 AT5G11700 1779 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007258 pacid=23165704 polypeptide=Lus10007258 locus=Lus10007258.g ID=Lus10007258.BGIv1.0 annot-version=v1.0 ATGTTGATTAGGAAGGGGTATGGATTTATAAGTGCAGCAGGAGGGACTGGGAAAGGTGGGGGTGGCGGTGGAAGAATTTCTATGGATTGTTACAGCATGC AGGAAGATGTGAAGGTTACTGTGCATGGTGGGTCTAGTATAGGGTGTCCTGAGAATGCCGGAGCAGCTGGTACCTACTTTAATGCTGATGTGCTGAGTTT GAGGGTTGGAAATGACAATATGACAACAGAAACAGAGACTCCTTTGCTAGTGTTTCCTACCCGTCCTCTATGGTCAAATGTTGTTGTGGAAAACAAGGCA AAAGTTTTGGTTCCCCTGCTATGGAGTAGAGTTCAGGTTGCCGATTTCTTCTTTAATCGTGAATGGGATCGTAATTATATTCAGTTCCCCATCTTTGAGT AG
AA sequence Show only first row Show all	>Lus10007258 pacid=23165704 polypeptide=Lus10007258 locus=Lus10007258.g ID=Lus10007258.BGIv1.0 annot-version=v1.0 MLIRKGYGFISAAGGTGKGGGGGGRISMDCYSMQEDVKVTVHGGSSIGCPENAGAAGTYFNADVLSLRVGNDNMTTETETPLLVFPTRPLWSNVVVENKA KVLVPLLWSRVQVADFFFNREWDRNYIQFPIFE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47020			unknown protein		Lus10007258 [exp]	0	1
AT1G47710			Serine protease inhibitor (SER...		Lus10002792 [exp]	17.0	0.7442
AT5G39250			F-box family protein (.1)		Lus10032969 [exp]	17.1	0.7512
AT5G26340		ATSTP13, MSS1, ...	SUGAR TRANSPORT PROTEIN 13, Ma...		Lus10001201 [exp]	40.8	0.7357
AT1G02090		ATCSN7, COP15, ...	FUSCA 5, CONSTITUTIVE PHOTOMOR...		Lus10028205 [exp]	42.2	0.6334
AT3G58030			RING/U-box superfamily protein...		Lus10016255 [exp]	58.9	0.7168
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10042861 [exp]	61.1	0.6920
AT4G32600			RING/U-box superfamily protein...		Lus10017750 [exp]	79.6	0.6905
AT5G49010		EMB2812, SLD5	SYNTHETIC LETHALITY WITH DPB11...		Lus10033618 [exp]	97.8	0.6897
AT1G55460	C2H2ZnF		DNA/RNA-binding protein Kin17,...		Lus10001697 [exp]	117.7	0.6745
AT2G28390			SAND family protein (.1)		Lus10000722 [exp]	117.7	0.6440

Compare expression of checked genes

Lus10007258 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.