Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47020 166 / 2e-46 unknown protein AT5G11700 105 / 4e-25 unknown protein AT4G32920 81 / 8e-17 glycine-rich protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043045 [exp] 96 / 6e-22 AT5G11700 1537 / 0.0 unknown protein Lus10011144 [exp] 96 / 7e-22 AT5G11700 1470 / 0.0 unknown protein Lus10007461 [exp] 92 / 1e-20 AT5G11700 1835 / 0.0 unknown protein Lus10005497 [exp] 92 / 1e-20 AT5G11700 1842 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G086200 [exp] 208 / 8e-61 AT5G47020 1620 / 0.0 unknown protein Potri.001G148300 [exp] 207 / 1e-60 AT5G47020 1624 / 0.0 unknown protein Potri.006G234500 [exp] 98 / 1e-22 AT5G11700 1793 / 0.0 unknown protein Potri.018G058300 [exp] 87 / 6e-19 AT5G11700 1779 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007259 pacid=23165715 polypeptide=Lus10007259 locus=Lus10007259.g ID=Lus10007259.BGIv1.0 annot-version=v1.0 ATGGACCGTTTATCAATGCTCAGATACATCTCCTGTTACCTGTTTCTATGGTTCATCCAGACACGACTACGTGTCTTCAGTTCAATGGACTATGATGGAG GAGGCTTTTGTTTGGAAAAATGTTTGCAAAACTCAGAATCAAGTTTGAACAGTAGCTCTTTGGTTACTTCCAGCAGCCTCGACATAACTGAATTTTCTTC CTCATTCAAGGATTCTGTATCATGTGAAGATCTGAGAGGGGTTGGATCATTTAATACCACCTGCTTGCTCAACTCCAACCTGACTTTAGATTCTGACCTC CATATTTATGGGACAGGGAACCTTGGGATACTTTCTCATGTTTCAATCACGTGCCCTAGAGACGGCTGTATCATTACTTTCAATTTGACTGGTATAGTAA CCATTGGGCAATACGCAGTTGTTAGTGCTGGTTCAGTTATTTTTGCCGCTGCTAACATGAGCATGGAGAGAAATTCTTCCATAAACACAACAGCCTTGGG TGGATTGCCTCCTTCTCAAACTAGTGGCACACCAGTAGGATATGATGGAGCTGGTGGAGGACATGGTGGCAGAGGTGCCTCCTGTTTGAAAAAGAATAAT ACAAATAATTGGGGCGGTGATGTCTATGCATGGGCAACATTAGCCAGGCCGTGGAGCTATGGAAGTAAAGGCGGGGGTACCTCCTCCGAGAAAAAGTTTG GTGGGAATGGCGGAGGACGTATCATGCTTAATGTGAAAGAGATATTGTATTTGAATGGATCCATTACTGCAGCAGGTGGGGATGGAGGAACGGATGGAGG AGGTGGATCCGGTGGAAGTATCTTTGTGCATGCTATAAAGCTGTGA
AA sequence Show only first row Show all	>Lus10007259 pacid=23165715 polypeptide=Lus10007259 locus=Lus10007259.g ID=Lus10007259.BGIv1.0 annot-version=v1.0 MDRLSMLRYISCYLFLWFIQTRLRVFSSMDYDGGGFCLEKCLQNSESSLNSSSLVTSSSLDITEFSSSFKDSVSCEDLRGVGSFNTTCLLNSNLTLDSDL HIYGTGNLGILSHVSITCPRDGCIITFNLTGIVTIGQYAVVSAGSVIFAAANMSMERNSSINTTALGGLPPSQTSGTPVGYDGAGGGHGGRGASCLKKNN TNNWGGDVYAWATLARPWSYGSKGGGTSSEKKFGGNGGGRIMLNVKEILYLNGSITAAGGDGGTDGGGGSGGSIFVHAIKL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47020			unknown protein		Lus10007259 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Lus10001040 [exp]	8.8	0.7767
AT5G22450			unknown protein		Lus10004878 [exp]	10.7	0.8135
AT2G36850		CHOR, ATGSL8, A...	CHORUS, glucan synthase-like 8...		Lus10040891 [exp]	17.8	0.7959
AT5G65770		CRWN4, LINC4	CROWDED NUCLEI 4, little nucle...		Lus10011568 [exp]	19.4	0.7958
AT5G49880			mitotic checkpoint family prot...		Lus10007439 [exp]	26.6	0.7830
AT5G66050			Wound-responsive family protei...		Lus10028398 [exp]	27.9	0.7668
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10043456 [exp]	30.1	0.7885
AT3G51050			FG-GAP repeat-containing prote...		Lus10014275 [exp]	31.9	0.7748
AT3G12590			unknown protein		Lus10001698 [exp]	32.5	0.7687
AT5G13530		KEG	KEEP ON GOING, protein kinases...		Lus10039491 [exp]	34.9	0.7488

Compare expression of checked genes

Lus10007259 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.