Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39830 597 / 0 DEG8, DEGP8 DEG PROTEASE 8, Trypsin family protein with PDZ domain (.1.2) AT3G27925 285 / 1e-92 DEGP, DegP1, DEG1 DegP protease 1 (.1) AT4G18370 199 / 8e-61 DEGP5, DEG5, HHOA PROTEASE HHOA PRECUSOR, DEGP protease 5 (.1) AT5G27660 99 / 1e-22 Trypsin family protein with PDZ domain (.1) AT5G40560 64 / 4e-11 DEGP13 DegP protease 13 (.1) AT2G47940 64 / 7e-11 EMB3117, DEGP2 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) AT1G65630 59 / 3e-09 DEGP3 DegP protease 3 (.1) AT1G65640 56 / 2e-08 DEGP4 DegP protease 4 (.1) AT5G40200 52 / 6e-07 DEGP9 DegP protease 9 (.1) AT5G36950 49 / 3e-06 DEGP10 DegP protease 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008781 [exp] 285 / 3e-92 AT3G27925 641 / 0.0 DegP protease 1 (.1) Lus10022234 [exp] 268 / 3e-85 AT3G27925 623 / 0.0 DegP protease 1 (.1) Lus10042822 [exp] 193 / 3e-58 AT4G18370 329 / 3e-112 PROTEASE HHOA PRECUSOR, DEGP protease 5 (.1) Lus10028120 [exp] 164 / 7e-47 AT4G18370 284 / 4e-94 PROTEASE HHOA PRECUSOR, DEGP protease 5 (.1) Lus10037815 [exp] 109 / 5e-26 AT5G27660 491 / 9e-173 Trypsin family protein with PDZ domain (.1) Lus10017093 [exp] 79 / 8e-16 AT5G27660 393 / 9e-135 Trypsin family protein with PDZ domain (.1) Lus10005931 [exp] 57 / 1e-08 AT2G47940 452 / 8e-155 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) Lus10032163 [exp] 50 / 3e-06 AT5G40200 843 / 0.0 DegP protease 9 (.1) Lus10014524 [exp] 49 / 6e-06 AT5G40200 843 / 0.0 DegP protease 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G129200 [exp] 611 / 0 AT5G39830 595 / 0.0 DEG PROTEASE 8, Trypsin family protein with PDZ domain (.1.2) Potri.001G348800 [exp] 280 / 1e-90 AT3G27925 595 / 0.0 DegP protease 1 (.1) Potri.011G083300 [exp] 193 / 1e-58 AT4G18370 355 / 4e-123 PROTEASE HHOA PRECUSOR, DEGP protease 5 (.1) Potri.013G018300 [exp] 108 / 9e-26 AT5G27660 516 / 0.0 Trypsin family protein with PDZ domain (.1) Potri.014G135200 [exp] 61 / 5e-10 AT2G47940 932 / 0.0 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) Potri.002G207200 [exp] 60 / 2e-09 AT2G47940 931 / 0.0 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) Potri.018G001100 [exp] 52 / 8e-08 AT3G27925 50 / 4e-07 DegP protease 1 (.1) Potri.012G077900 [exp] 49 / 3e-06 AT5G40200 845 / 0.0 DegP protease 9 (.1) Potri.015G073100 [exp] 49 / 3e-06 AT5G40200 842 / 0.0 DegP protease 9 (.1) Potri.004G046900 [exp] 48 / 9e-06 AT1G28320 737 / 0.0 protease-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0124 [flax] [poplar] Peptidase_PA PF00089 [flax] [poplar] Trypsin Trypsin
Representative CDS sequence Show only first row Show all	>Lus10007262 pacid=23165703 polypeptide=Lus10007262 locus=Lus10007262.g ID=Lus10007262.BGIv1.0 annot-version=v1.0 ATGGGCAGCAGTCGTAGCATAAAAAGGCGGATGCTACTTGCAAGTTTTCCCATGCTTCTAGTTTACAATCCTCCAAGGTACTTACCAGCCAAAGCATTGG GAGATCCATCGGTGACAGTTGAACAAGTAACTCCTCCTATTATTCCCACTGGACCACTCTTTCCTACAGAGGAAAGAATTGTTAGGCTGTTCGAAAAGAA TACATATTCTGTTGTCAACATCTTTGATGTGACGTTGCGCCCGCTACTAAAAGTAACTGGCGTTGTTGAGGTTCCTGAAGGAAATGGTTCTGGCGTTATC TGGGATAGGCAGGGGCATGTTGTCACTAATTATCATGTGATAGGTAATTCTCTTTCAAGAAATCCAAAACCTGGGGAAGTTGTTGCACGTATCAATATTC TGACATCAGAAGGGGTTCAAAAGAACTTCGAGGGAAGATTGGTTGGTGCTGACCGCAGTAAGGACCTTGCTGTGTTGAAGGTAGAAGCGCCTGAAGATCT GTTGAATCCAACCAAACTAGGGCAATCTGGTTTAGTGAAGGTTGGACAACAATGCCTGGCAATTGGAAATCCTTTTGGTTTTGACCACACGCTCACTGTT GGAGTTATCAGCGGACTTAATCGAGACATATTTAGTCAAACAGGAGTGACAATTAGTGGCGGAATTCAAACAGATGCTGCCATTAACCCAGGGAATAGTG GAGGCCCATTGTTGGATTCTAAAGGAAACCTGATTGGGATCAATACAGCAATATTCACTCAGACAGGGACATCGGCTGGAGTAGGGTTTGCCATTCCATC TTCGACTGTCGTCAAGATTGTACCCCAGTTGATTCAATTTGGTAAAGCTATTCGAGCTGGATTGAACTTGGACATTGCTCCTGATTTAGTTGCAAGTCAA CTAAATGTTCGCAATGGTGCCCTCATATTGCAGGTTCCTGGAGACAGTGTTGCTGCAAAGGCTGGCTTACTTGGTACAACGAGGGGGTTTGCTGGGAAAA TAGTACTGGGGGATGTTATCATGTCTGTGGACGACAAACTGGTGAAAAGCAAGTCAGAGTTGGATAGAGTGTTGGATGATTACAGCGTGGGGGATGAAGT AGTGTTGAGGATTCAGAGAAGTAGTGGGGACAACTTGGAAGTGCGTGTAAATCTGGAGCAGAGAGGTTAA
AA sequence Show only first row Show all	>Lus10007262 pacid=23165703 polypeptide=Lus10007262 locus=Lus10007262.g ID=Lus10007262.BGIv1.0 annot-version=v1.0 MGSSRSIKRRMLLASFPMLLVYNPPRYLPAKALGDPSVTVEQVTPPIIPTGPLFPTEERIVRLFEKNTYSVVNIFDVTLRPLLKVTGVVEVPEGNGSGVI WDRQGHVVTNYHVIGNSLSRNPKPGEVVARINILTSEGVQKNFEGRLVGADRSKDLAVLKVEAPEDLLNPTKLGQSGLVKVGQQCLAIGNPFGFDHTLTV GVISGLNRDIFSQTGVTISGGIQTDAAINPGNSGGPLLDSKGNLIGINTAIFTQTGTSAGVGFAIPSSTVVKIVPQLIQFGKAIRAGLNLDIAPDLVASQ LNVRNGALILQVPGDSVAAKAGLLGTTRGFAGKIVLGDVIMSVDDKLVKSKSELDRVLDDYSVGDEVVLRIQRSSGDNLEVRVNLEQRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39830		DEG8, DEGP8	DEG PROTEASE 8, Trypsin family...		Lus10007262 [exp]	0	1
AT5G44600			S-adenosyl-L-methionine-depend...		Lus10038404 [exp]	1.0	0.9789
AT5G16810			Protein kinase superfamily pro...		Lus10040743 [exp]	2.8	0.9635
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Lus10035036 [exp]	4.5	0.9634
AT3G60370			FKBP-like peptidyl-prolyl cis-...		Lus10042897 [exp]	4.7	0.9689
AT5G53850			haloacid dehalogenase-like hyd...		Lus10041928 [exp]	5.5	0.9586
AT5G48830			unknown protein		Lus10038165 [exp]	6.0	0.9492
AT1G04620		HCAR	7-hydroxymethyl chlorophyll a ...		Lus10043143 [exp]	6.0	0.9557
AT4G39710		PnsL4, FKBP16-2	Photosynthetic NDH subcomplex...		Lus10016811 [exp]	6.5	0.9625
AT3G04260		PDE324, PTAC3	PIGMENT DEFECTIVE 324, plastid...		Lus10003577 [exp]	7.5	0.9489
AT5G11450		PPD5	PsbP domain protein 5, Mog1/Ps...		Lus10001861 [exp]	8.1	0.9635

Compare expression of checked genes

Lus10007262 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.