Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26870 289 / 7e-95 NAC FEZ, ANAC009 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT5G39820 274 / 3e-90 NAC ANAC094 NAC domain containing protein 94 (.1) AT2G43000 221 / 2e-70 NAC ANAC042, JUB1, JUNGBRUNNEN1 NAC domain containing protein 42 (.1) AT3G12910 189 / 1e-57 NAC NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT2G02450 187 / 9e-56 NAC LOV1, ANAC034, ANAC035 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) AT3G15510 182 / 3e-54 NAC ATNAC2, ANAC056, NARS1 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) AT1G01720 179 / 4e-54 NAC ATAF1, ANAC002 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT4G27410 178 / 2e-53 NAC RD26, ANAC072 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) AT3G04070 177 / 9e-53 NAC ANAC047 NAC domain containing protein 47 (.1.2) AT1G61110 177 / 9e-53 NAC ANAC025 NAC domain containing protein 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015367 [exp] 553 / 0 AT1G26870 298 / 8e-99 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10036749 [exp] 296 / 3e-97 AT1G26870 306 / 4e-100 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10037178 [exp] 296 / 6e-97 AT5G39820 306 / 3e-101 NAC domain containing protein 94 (.1) Lus10030478 [exp] 285 / 2e-93 AT5G39820 297 / 4e-98 NAC domain containing protein 94 (.1) Lus10031189 [exp] 223 / 6e-70 AT3G12910 264 / 9e-87 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10031767 [exp] 213 / 7e-68 AT2G43000 236 / 3e-78 NAC domain containing protein 42 (.1) Lus10007410 [exp] 192 / 3e-58 AT3G15510 241 / 1e-78 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Lus10038332 [exp] 189 / 6e-58 AT2G43000 231 / 1e-75 NAC domain containing protein 42 (.1) Lus10036117 [exp] 191 / 1e-57 AT3G15510 241 / 2e-78 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G082000 [exp] 322 / 2e-108 AT1G26870 299 / 3e-98 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.004G126901 [exp] 317 / 3e-106 AT5G39820 305 / 1e-101 NAC domain containing protein 94 (.1) Potri.007G066300 [exp] 227 / 2e-72 AT3G12910 269 / 2e-89 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.005G098000 [exp] 219 / 2e-69 AT3G12910 271 / 2e-90 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.002G057200 [exp] 218 / 4e-69 AT2G43000 282 / 4e-95 NAC domain containing protein 42 (.1) Potri.005G205400 [exp] 216 / 4e-68 AT2G43000 269 / 6e-90 NAC domain containing protein 42 (.1) Potri.003G149700 [exp] 209 / 2e-65 AT2G43000 245 / 2e-80 NAC domain containing protein 42 (.1) Potri.001G080900 [exp] 208 / 4e-65 AT2G43000 257 / 3e-85 NAC domain containing protein 42 (.1) Potri.011G046700 [exp] 192 / 2e-58 AT1G61110 331 / 8e-113 NAC domain containing protein 25 (.1) Potri.004G038000 [exp] 192 / 4e-58 AT1G61110 332 / 3e-113 NAC domain containing protein 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10007263 pacid=23165713 polypeptide=Lus10007263 locus=Lus10007263.g ID=Lus10007263.BGIv1.0 annot-version=v1.0 ATGGAAGAGAAAAGTGATCATGTGGAGGAAGAGATGCTGCCTGGTTTCCGTTTTCACCCAACTGACGAGGAGTTGGTTGGTTTTTACCTGACGAGGAAAA TACAGCACCGTGCTCTTGCTATTGAACTCATCAAGCAAGTTGATATCTACAAGTACGATCCCTGGGATCTTCCAAAGCTGGCGACAACAGGGGAGAAAGA GTGGTATTTCTACTGCCCAAGAGACCGTAAATACAGGAACAGCGCCAGGCCGAACCGGGTTACCGGAGCTGGTTTCTGGAAGGCAACCGGAACAGACCGA CCTATATATTCATCGGAAGGAAGCAAATGCATAGGGTTGAAGAAATCACTGGTTTTTTACAGAGGAAGAGCCGCAAAAGGCATTAAAACCGACTGGATGA TGCATGAGTTCCGTCTCCCTCCTCTTCCTGACCATTCCCCTTCTCCACCTCCTCATCCTCCTAAGAAGCTCCTCCTCGACAAAACCCTTCCTCCAAATGA AGCTTGGGCGATTTGCCGGATATTCAAGAAGACCAATTCAATGGCTCAAAGAGCTCTTTCCCATCCATGGATGTCGGCCCCTATGCTTCCTGCTGCTGAC AACTCCTCCCATATATTCAATCACAACAATTCAGAAGTTGGATCATCACTTGTCTTCCAGCAACAATCCATGTTTCCATTCCCAGCTTGCGCCACTAACA ACAATTTCATCTTCCCTCCAATCGAGTCTTCAATTCCACCCAAGACCCTGCAGATGTCGGATCCTAGCAAGGATTCTACTACTTCTGAATCGCTAGAATT CAGTGGATTCTCTATCTGTAATTTGCAACATAGCTTGGAAAGCAGTGCTGATCAGGGAGACGATTTGAGGAAGAACAACAATATTAATAATCAGTGGGTT GGGATTGGGATTGGGATTGGGAATGGGATGAGGTCGTCGTCAATTGGATTTCCATTCAGTTTGCCAACAGATGATGATGTTTGGGATACGGTGGTGCATC CTGGTGGAGACATGTCCAGTACCACTGCTTGTTATTCCACTAACAAATGCTACACTTAA
AA sequence Show only first row Show all	>Lus10007263 pacid=23165713 polypeptide=Lus10007263 locus=Lus10007263.g ID=Lus10007263.BGIv1.0 annot-version=v1.0 MEEKSDHVEEEMLPGFRFHPTDEELVGFYLTRKIQHRALAIELIKQVDIYKYDPWDLPKLATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDR PIYSSEGSKCIGLKKSLVFYRGRAAKGIKTDWMMHEFRLPPLPDHSPSPPPHPPKKLLLDKTLPPNEAWAICRIFKKTNSMAQRALSHPWMSAPMLPAAD NSSHIFNHNNSEVGSSLVFQQQSMFPFPACATNNNFIFPPIESSIPPKTLQMSDPSKDSTTSESLEFSGFSICNLQHSLESSADQGDDLRKNNNINNQWV GIGIGIGNGMRSSSIGFPFSLPTDDDVWDTVVHPGGDMSSTTACYSTNKCYT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39820	NAC	ANAC094	NAC domain containing protein ...		Lus10007263 [exp]	0	1
AT5G65790	MYB	AtMYB68	myb domain protein 68 (.1)		Lus10028248 [exp]	1.7	0.9760
AT4G33150		LKR/SDH, SDH	lysine-ketoglutarate reductase...		Lus10038086 [exp]	3.5	0.9707
AT4G32650		AtLKT1, KAT3, A...	A. thaliana low-K+-tolerant 1,...		Lus10037904 [exp]	3.5	0.9701
AT1G14160			Uncharacterised protein family...		Lus10037160 [exp]	4.5	0.9736
AT4G03965			RING/U-box superfamily protein...		Lus10015152 [exp]	5.9	0.9654
					Lus10041676 [exp]	6.7	0.9621
AT4G34890		ATXDH1	xanthine dehydrogenase 1 (.1)		Lus10034306 [exp]	7.3	0.9645
AT5G67400		RHS19	root hair specific 19 (.1)		Lus10035204 [exp]	7.5	0.9614
AT5G36930			Disease resistance protein (TI...		Lus10007821 [exp]	8.1	0.9660
AT1G02400		ATGA2OX4, ATGA2...	DOWNSTREAM TARGET OF AGL15 1, ...		Lus10017094 [exp]	8.8	0.9590

Compare expression of checked genes

Lus10007263 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.