Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39785 399 / 2e-130 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) AT1G69610 245 / 7e-72 Protein of unknown function (DUF1666) (.1) AT3G20260 120 / 9e-29 Protein of unknown function (DUF1666) (.1) AT1G73850 74 / 2e-13 Protein of unknown function (DUF1666) (.1) AT3G01175 64 / 2e-10 Protein of unknown function (DUF1666) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015368 [exp] 1079 / 0 AT5G39785 445 / 3e-148 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) Lus10037176 [exp] 295 / 5e-90 AT5G39785 334 / 4e-106 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) Lus10036751 [exp] 294 / 6e-90 AT5G39785 328 / 7e-104 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) Lus10033354 [exp] 123 / 6e-30 AT3G20260 462 / 5e-162 Protein of unknown function (DUF1666) (.1) Lus10034809 [exp] 114 / 7e-27 AT3G20260 487 / 3e-171 Protein of unknown function (DUF1666) (.1) Lus10038936 [exp] 74 / 2e-13 AT1G73850 457 / 4e-155 Protein of unknown function (DUF1666) (.1) Lus10027226 [exp] 72 / 1e-12 AT1G73850 455 / 5e-153 Protein of unknown function (DUF1666) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G082300 [exp] 507 / 6e-170 AT5G39785 462 / 1e-153 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) Potri.004G126800 [exp] 504 / 1e-169 AT5G39785 462 / 2e-154 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) Potri.017G084200 [exp] 130 / 9e-32 AT3G01175 140 / 1e-36 Protein of unknown function (DUF1666) (.1) Potri.008G004400 [exp] 111 / 6e-26 AT3G20260 426 / 3e-147 Protein of unknown function (DUF1666) (.1) Potri.015G046900 [exp] 88 / 6e-18 AT1G73850 416 / 2e-138 Protein of unknown function (DUF1666) (.1) Potri.012G056400 [exp] 76 / 4e-14 AT1G73850 397 / 5e-131 Protein of unknown function (DUF1666) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07891 [flax] [poplar] DUF1666 Protein of unknown function (DUF1666)
Representative CDS sequence Show only first row Show all	>Lus10007264 pacid=23165701 polypeptide=Lus10007264 locus=Lus10007264.g ID=Lus10007264.BGIv1.0 annot-version=v1.0 ATGGCTGATGTCTCCAGAAAATTGCTTCCCTTCGCTGCCGCTTTCTGGGTTTCCTTCTCCACTCTGTTCCTTGCTCTGTTTCGCTTCCTCACTGGAACCT CCAATTTCAGAGTGGAAAACGGTGTTTCTATAGCTAAAGGCTCCAACCTTATTGAACCGGAGATTCCTGAAACAGAGACGGCGTTGCCGGATGTTTCCGA GTATGAAGCCCTGGAGGATGAGGATGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGATCAGAAACCCAAATTCGTTTTCAAATTCGATTATCAG ATGTACAGAGAAGACCAGATTGAGAACGATTTACCCTCTTCAAGTGCAAATAAGTATAAATTCTTCCTTGGAGAGGACATGTGTCATTCCATCGAGGAGC CGTGTGCCGTTCGCCTCACCGTAAAAGAATGCTTTGTCGATTCTGGCGGGGGTTTAGCTGATAGGGTTTCTGGAGACGTGGTTAAGAGCGTTGATGAAGA GGTAGCTCTTGCAGAATCTCATGTTGAAAGACTTGAAGAGATGTCTACGGAAGAGGAGGAAACGAAGCCTGATGAGGCCGAATTTTTTTTTCAAGACCCT TCAATCGTCAAAGGGAAGGAGCCAGTTGATGCTGTGTTTCCATCAGAAGAATCCATGGCGTCTGATGACGATGGATCGGAGTCAACTGTTTCGACTCGTT CAACCTGCGATGAATTATTGTCAGATTATGATTCTGAAGATGACGGCTTGAGCAGTTTTGTCAACAGCTTGAATTCTGTATACGGGGCTGATGATTTTGA GGATGAAGAAGATAGTAGTAATAATACCATGGAAGAGCTGCAAAAGGAAGTGGGTTCCGCGGAGGTAAATGATCTAAAGAATAGTAAAGATGCTCATGTT CATTCGCAATCAGGTGCTTGGGATTTGGAGGATGGTAATAATGGATTAGAATTGTTGTGGGAGCACCAAGACCTGATAGAGCAGATGCAAATGGAGCTGA AAAAGGTCAAGGCAACGGGTCTGCCAACCATACTGGAAGATGACGAGTGTCCAAAGATTGTAATTGAAGATTTGAAGCCATGGAAGATCGAAGATAAGTT TCATCATGAAGATAAGATGACTGAGCTTCACAGGTTCTACAAGAGTTACAGAGACAGAATGCGCAAATTTGATATATTGAATTACCAGAAGACGTATGCT ACAAGCTTTCTGCAATCCAAGGACCCACTCGAGTCCATGTCATCAACACAGAAAAGTGAGGCTCCAGCTTTGACATCCCTTTTCTCTCAGAAACTGATGT TACTCAAGCGTAAAAAGTCAGGTTTTGATCCAATGGGAAACTTTGTCAAGGAATTGCAGAGTGCTTTGGAAACAGTCTATGTCGGTCAAATGTGCCTCTC ATGGGAAATCCTTCATTGGCAGTACCAGAAAGCACTAGAGCTCTACGATTCTGACCATTGCGGCAGACGAAGATACAATGAAGTTGCTGGCGAATTCCAG CAGTTCCAAGTTTTGTTGCAAAGGTTCATAGAGAACGAGCCTTTTGAAGATGATGATGGCACCAAGGATAAGAAACCAAGAAGAAGAGGAAAGGATGTGG GCACAATTACAAGCGAAGAGCTGGTAGAGATCATGGAAGAATCCATCAGAATCATGTGGAGATTCATTCGGACGGATAAAGATGCAAAAACCAGAACTCT CAAGCTCCCGAAGAAAGGAACTCAAGTACAACCTGGTGAAGATCCTGATAGACTTGAGCTGTTCACAGAAGTCCACACCAGTCTCCAAAAGAAGGAGAAA AGGGTGAAGGAGATGGTGCGGAGTGGGAGTTGCATTCTGAGGAAATTTCAGAAGCAGCAGCAAAAGCAAGAAGAAGAAAGTTCATCATCAGGAGCAGCAG CAGCAGAAAATAATGTTGTATGCTTCTTCTCTCAAGTGGACATGAAGTTGGTTGCCAGAGTGCTCAACATGTCCAATATAACAACGGAGCAGTTAGTGTG GTGTCGGAGTAAGTTGAGGCAGATCAATTTTGTAGGCAAGAGGATTGATGTAGAGCCTTCTTTTTCACTTTTCCCTTGCTAG
AA sequence Show only first row Show all	>Lus10007264 pacid=23165701 polypeptide=Lus10007264 locus=Lus10007264.g ID=Lus10007264.BGIv1.0 annot-version=v1.0 MADVSRKLLPFAAAFWVSFSTLFLALFRFLTGTSNFRVENGVSIAKGSNLIEPEIPETETALPDVSEYEALEDEDEEEEEEEEKEEEDQKPKFVFKFDYQ MYREDQIENDLPSSSANKYKFFLGEDMCHSIEEPCAVRLTVKECFVDSGGGLADRVSGDVVKSVDEEVALAESHVERLEEMSTEEEETKPDEAEFFFQDP SIVKGKEPVDAVFPSEESMASDDDGSESTVSTRSTCDELLSDYDSEDDGLSSFVNSLNSVYGADDFEDEEDSSNNTMEELQKEVGSAEVNDLKNSKDAHV HSQSGAWDLEDGNNGLELLWEHQDLIEQMQMELKKVKATGLPTILEDDECPKIVIEDLKPWKIEDKFHHEDKMTELHRFYKSYRDRMRKFDILNYQKTYA TSFLQSKDPLESMSSTQKSEAPALTSLFSQKLMLLKRKKSGFDPMGNFVKELQSALETVYVGQMCLSWEILHWQYQKALELYDSDHCGRRRYNEVAGEFQ QFQVLLQRFIENEPFEDDDGTKDKKPRRRGKDVGTITSEELVEIMEESIRIMWRFIRTDKDAKTRTLKLPKKGTQVQPGEDPDRLELFTEVHTSLQKKEK RVKEMVRSGSCILRKFQKQQQKQEEESSSSGAAAAENNVVCFFSQVDMKLVARVLNMSNITTEQLVWCRSKLRQINFVGKRIDVEPSFSLFPC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39785			Protein of unknown function (D...		Lus10007264 [exp]	0	1
AT2G27500			Glycosyl hydrolase superfamily...		Lus10004869 [exp]	1.4	0.8490
AT5G38900			Thioredoxin superfamily protei...		Lus10034368 [exp]	2.6	0.8723
AT1G19835			Plant protein of unknown funct...		Lus10032386 [exp]	5.7	0.8325
					Lus10021578 [exp]	8.9	0.8096
AT1G79710			Major facilitator superfamily ...		Lus10024099 [exp]	9.0	0.8019
AT2G39920			HAD superfamily, subfamily III...		Lus10002714 [exp]	9.9	0.8169
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10025891 [exp]	12.0	0.8376
AT5G05170		IXR1, CEV1, ATH...	ISOXABEN RESISTANT 1, CONSTIT...		Lus10039607 [exp]	15.1	0.8412
AT1G29120			Hydrolase-like protein family ...		Lus10013909 [exp]	15.5	0.7943
AT1G60690			NAD(P)-linked oxidoreductase s...		Lus10041303 [exp]	16.1	0.7697

Compare expression of checked genes

Lus10007264 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.