Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05060 292 / 1e-94 NOP56-like pre RNA processing ribonucleoprotein (.1) AT5G27120 286 / 3e-92 NOP56-like pre RNA processing ribonucleoprotein (.1) AT5G27140 193 / 2e-57 NOP56-like pre RNA processing ribonucleoprotein (.1) AT1G56110 134 / 7e-35 NOP56 homolog of nucleolar protein NOP56 (.1) AT3G12860 131 / 5e-34 NOP56-like pre RNA processing ribonucleoprotein (.1) AT1G60170 67 / 4e-12 EMB1220 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004143 [exp] 381 / 4e-129 AT5G27120 730 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Lus10001716 [exp] 380 / 9e-129 AT5G27120 722 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Lus10033846 [exp] 361 / 3e-121 AT5G27120 758 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Lus10018995 [exp] 358 / 8e-120 AT5G27120 734 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Lus10017214 [exp] 127 / 2e-32 AT1G56110 783 / 0.0 homolog of nucleolar protein NOP56 (.1) Lus10021096 [exp] 127 / 3e-32 AT1G56110 782 / 0.0 homolog of nucleolar protein NOP56 (.1) Lus10008395 [exp] 48 / 2e-06 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G045600 [exp] 322 / 1e-105 AT5G27120 768 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Potri.013G032300 [exp] 313 / 2e-102 AT3G05060 737 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Potri.012G095400 [exp] 127 / 4e-32 AT1G56110 761 / 0.0 homolog of nucleolar protein NOP56 (.1) Potri.015G092900 [exp] 125 / 1e-31 AT3G12860 761 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Potri.014G102800 [exp] 71 / 4e-13 AT1G60170 610 / 0.0 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1) Potri.002G176000 [exp] 69 / 2e-12 AT1G60170 591 / 0.0 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01798 [flax] [poplar] Nop snoRNA binding domain, fibrillarin
Representative CDS sequence Show only first row Show all	>Lus10007265 pacid=23165698 polypeptide=Lus10007265 locus=Lus10007265.g ID=Lus10007265.BGIv1.0 annot-version=v1.0 ATGTCATTCAGGTCATCATCAACAACACAAAATGAGTTTATGACTTCTGGAACCGCTGACGAGTGGATGACCACAAGTGTAACCGTGAGTCGGTCAAGGG CGTGGTTGACAGCTGTCAGTCACGAGCGTGGCCACCTAAAGATCACGGTCGTGACCATCAGTAGGTCACAAGCGTGGTCGTCAGGCAGTCACGAGCGTTG TGAGGTGGAGAAGGCAGTGCTGATATTGGCAGTTGCTTCGAGAGGATATAGGAAGCTTCAAAAGGAGATATTAACTGAAGAAGCCGAGACAGAAGTGAAG GAAGCTGCAATGATATCCATGGGTACCGAAATCAGCGAGCACGACTTGACAAACATTCGCCAACTCTGTGACCAGGGAACAACTTACGATTACCTCAATA GCAGGATGAACACGATTGCATCGAATTTCATTGCTCTCGTCGGGGAACTTGTTGGTGCTCGACTAATCGCCCATGGCGGTAGGTTGATGAATCTAGTCAA GCAGCCCGGGAGCATGGTTCAGATTCTCGGTGGGAAGAAGGCCTTGTTCAGAGTTTGGAAGACTAAGCACGCTACACCGAAATATGGGTTGATATACCAT GCGCCCCTCGTCGGCCAAGCGCCTCCGAAAATGAAAAGGAAGATTTCTAGGTCTTTGGCCGCGAAAGCTTCTCTGGGGATTCGATATGATGCGCTTGGAG ATGGCCAGGATAACACGATGGGACTTGAGAATCCTGGTAAGCTCGAAGCTCTATTGAGGAGCCTTGAAGGCAAGGAATTGGGACGATCGACTAGTTCGGT GAAAGGAAAGTCGATGATTGAACCATATAACAAAGATAGGAAGAAGGGAGCCGGTGGACTCATAACTCCTGCAAAGACCTACAATCCTTACACTGATGTT GTTCTTGGCCTGACTTCGAAATCGAACGAGGAGGAACCCGTGGAGAAGAAGAGGAAGACTGACGAGGAGCCAGCTGAGAAGGCTCCAGCTATTAAAAGAA GAAAGACAAAAAGAAGAAGAAGAGTAAAGAAGTGGAAGAAACTGAAGAAGCAGAAGAAGAAGGTGCAGCAAAGAAGGAAGGAAAAGAAGAAGAATGATAT CGTTTAA
AA sequence Show only first row Show all	>Lus10007265 pacid=23165698 polypeptide=Lus10007265 locus=Lus10007265.g ID=Lus10007265.BGIv1.0 annot-version=v1.0 MSFRSSSTTQNEFMTSGTADEWMTTSVTVSRSRAWLTAVSHERGHLKITVVTISRSQAWSSGSHERCEVEKAVLILAVASRGYRKLQKEILTEEAETEVK EAAMISMGTEISEHDLTNIRQLCDQGTTYDYLNSRMNTIASNFIALVGELVGARLIAHGGRLMNLVKQPGSMVQILGGKKALFRVWKTKHATPKYGLIYH APLVGQAPPKMKRKISRSLAAKASLGIRYDALGDGQDNTMGLENPGKLEALLRSLEGKELGRSTSSVKGKSMIEPYNKDRKKGAGGLITPAKTYNPYTDV VLGLTSKSNEEEPVEKKRKTDEEPAEKAPAIKRRKTKRRRRVKKWKKLKKQKKKVQQRRKEKKKNDIV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05060			NOP56-like pre RNA processing ...		Lus10007265 [exp]	0	1
					Lus10011203 [exp]	2.0	0.8353
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10006971 [exp]	2.8	0.8218
					Lus10010245 [exp]	4.5	0.7578
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10034969 [exp]	5.5	0.7381
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10012001 [exp]	6.3	0.7601
					Lus10013529 [exp]	7.1	0.7847
AT3G04070	NAC	ANAC047	NAC domain containing protein ...		Lus10036959 [exp]	11.4	0.7057
AT4G26120			Ankyrin repeat family protein ...		Lus10024842 [exp]	14.7	0.7005
AT2G25270			unknown protein		Lus10014341 [exp]	16.1	0.7269
					Lus10018846 [exp]	16.5	0.7190

Compare expression of checked genes

Lus10007265 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.