Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01280 360 / 3e-126 VDAC1, ATVDAC1 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) AT5G15090 344 / 5e-120 VDAC3, ATVDAC3 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 3, voltage dependent anion channel 3 (.1.2) AT5G67500 250 / 7e-83 VDAC2, ATVDAC2 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) AT5G57490 233 / 3e-76 VDAC4, ATVDAC4 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 4, voltage dependent anion channel 4 (.1) AT3G49920 145 / 2e-42 VDAC5, ATVDAC5 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 5, voltage dependent anion channel 5 (.1.2) AT5G37610 82 / 5e-19 Eukaryotic porin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015357 [exp] 505 / 0 AT3G01280 385 / 5e-136 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Lus10013271 [exp] 366 / 2e-128 AT3G01280 400 / 3e-142 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Lus10030794 [exp] 354 / 2e-123 AT3G01280 379 / 3e-133 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Lus10037212 [exp] 258 / 1e-85 AT3G01280 286 / 1e-96 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Lus10036716 [exp] 242 / 6e-79 AT3G01280 265 / 6e-88 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Lus10019284 [exp] 224 / 1e-72 AT5G67500 362 / 9e-127 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Lus10011539 [exp] 204 / 1e-64 AT5G67500 340 / 4e-118 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Lus10007739 [exp] 197 / 3e-62 AT5G67500 317 / 5e-109 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Lus10018683 [exp] 194 / 5e-61 AT5G67500 309 / 6e-106 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G078200 [exp] 396 / 2e-140 AT3G01280 414 / 9e-148 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Potri.008G194900 [exp] 386 / 1e-136 AT3G01280 418 / 5e-149 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Potri.010G033500 [exp] 381 / 2e-134 AT3G01280 390 / 5e-138 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Potri.006G169400 [exp] 257 / 9e-86 AT5G57490 394 / 1e-139 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 4, voltage dependent anion channel 4 (.1) Potri.018G093900 [exp] 243 / 4e-80 AT5G57490 387 / 9e-137 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 4, voltage dependent anion channel 4 (.1) Potri.005G146800 [exp] 242 / 7e-80 AT5G67500 416 / 2e-148 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Potri.007G055800 [exp] 235 / 6e-77 AT5G67500 405 / 7e-144 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Potri.014G016300 [exp] 229 / 7e-75 AT5G67500 344 / 5e-120 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Potri.012G070300 [exp] 157 / 8e-47 AT3G01280 163 / 3e-49 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Potri.001G294100 [exp] 156 / 1e-45 AT5G67500 225 / 3e-72 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0193 [flax] [poplar] MBB PF01459 [flax] [poplar] Porin_3 Eukaryotic porin
Representative CDS sequence Show only first row Show all	>Lus10007267 pacid=23165705 polypeptide=Lus10007267 locus=Lus10007267.g ID=Lus10007267.BGIv1.0 annot-version=v1.0 ATGGTGAAGGGTCCAGGTTTCTACTCTGAAATCGGCAAGAAGACCAGAGATCTATTGTACAAGGACTATCACAGCGACCAGAAGTTCACTGTCACCACCG TCTCTCCTGTTGGAGTTGCAATTACACATTCTGCTACTAAGAAAGGGGAGCTGTTTGTGGCTGATATCACTACTCAGCGGAAGAGCAAGAATGTGACAAC TGATATCAAAGTGGACACGGACTCCAACATCCATACCACCATAACTGTTGATGAACTTGCTCCTGGGCTTAAGACAATCTACAGCTTCAACGTTCCAGAT CAAAGGTCTGGCAAGTTGGAGGTTCAATACAAGCATGACTATGCTGCTGTAGCTTCAAGCATTGGCTTGACAGCAAGCCCTGTTGTGAACTTCTCTGGTG TAATTGGAAGTGACGCTCTTTCTCTTGGCACTGATGTTTCTTTTGATATCAAAACTGGAAACTTCAACAAGTACAATGCTGGATTGAGCTATGCCAATGC AGATCTTGTTGCTGCTTTGGCATTGAATGACAAGGGTGATTCTCTCGTCGCTTCCTATTACCACAATGTGAACAAGTTCACTGCTGTTGGTGCTGAAGTG GGGTATAGCTTATCTAGCAATAAGACCATCATGACTGTTGGAAGCCAGCATGTATTGGATCCACTGACAACATTGAAGGCTCGCGTGAACAACAATGGCA AGGCAAATGCTCTAATCCAGCATGAATGGAGGCCGAGATCATTCTTCACCGTTACCGGAGAGGTGGACTCCAAGGCAATTGAAAAGAGTGCTAAGGTGGG AATGGCTCTTGCTCTCAAGTTATGA
AA sequence Show only first row Show all	>Lus10007267 pacid=23165705 polypeptide=Lus10007267 locus=Lus10007267.g ID=Lus10007267.BGIv1.0 annot-version=v1.0 MVKGPGFYSEIGKKTRDLLYKDYHSDQKFTVTTVSPVGVAITHSATKKGELFVADITTQRKSKNVTTDIKVDTDSNIHTTITVDELAPGLKTIYSFNVPD QRSGKLEVQYKHDYAAVASSIGLTASPVVNFSGVIGSDALSLGTDVSFDIKTGNFNKYNAGLSYANADLVAALALNDKGDSLVASYYHNVNKFTAVGAEV GYSLSSNKTIMTVGSQHVLDPLTTLKARVNNNGKANALIQHEWRPRSFFTVTGEVDSKAIEKSAKVGMALALKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10007267 [exp]	0	1
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Lus10001681 [exp]	2.4	0.9653
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10035650 [exp]	3.2	0.9598
AT3G06790			plastid developmental protein ...		Lus10016825 [exp]	3.2	0.9357
AT5G02740			Ribosomal protein S24e family ...		Lus10003991 [exp]	3.9	0.9462
AT1G33110			MATE efflux family protein (.1...		Lus10013626 [exp]	3.9	0.9273
AT2G26830		EMB1187	embryo defective 1187, Protein...		Lus10019424 [exp]	5.1	0.9207
AT1G60170		EMB1220	embryo defective 1220, pre-mRN...		Lus10012997 [exp]	5.7	0.9383
AT2G37990			ribosome biogenesis regulatory...		Lus10043278 [exp]	5.7	0.9305
AT5G61770		PPAN	PETER PAN-like protein (.1.2.3...		Lus10002672 [exp]	7.1	0.9055
AT3G61140		EMB78, CSN1, CO...	EMBRYO DEFECTIVE 78, COP9 SIGN...		Lus10036566 [exp]	7.2	0.9417

Compare expression of checked genes

Lus10007267 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.