Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04680 566 / 0 CLPS3 CLP-similar protein 3 (.1.2) AT5G39930 371 / 4e-126 CLPS5 CLP1-similar protein 5 (.1) AT5G11010 71 / 2e-13 Pre-mRNA cleavage complex II protein family (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015355 [exp] 715 / 0 AT3G04680 674 / 0.0 CLP-similar protein 3 (.1.2) Lus10014756 [exp] 73 / 9e-14 AT5G11010 440 / 2e-152 Pre-mRNA cleavage complex II protein family (.1.2.3) Lus10033124 [exp] 68 / 3e-12 AT5G11010 473 / 7e-168 Pre-mRNA cleavage complex II protein family (.1.2.3) Lus10036655 [exp] 68 / 4e-12 AT5G11010 467 / 2e-165 Pre-mRNA cleavage complex II protein family (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G077200 [exp] 642 / 0 AT3G04680 655 / 0.0 CLP-similar protein 3 (.1.2) Potri.012G073500 [exp] 69 / 1e-12 AT5G11010 480 / 2e-170 Pre-mRNA cleavage complex II protein family (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06807 [flax] [poplar] Clp1 Pre-mRNA cleavage complex II protein Clp1 CL0023 [flax] [poplar] P-loop_NTPase PF03205 [flax] [poplar] MobB Molybdopterin guanine dinucleotide synthesis protein B
Representative CDS sequence Show only first row Show all	>Lus10007269 pacid=23165699 polypeptide=Lus10007269 locus=Lus10007269.g ID=Lus10007269.BGIv1.0 annot-version=v1.0 ATGGCATACGGTGGTGCAGCCTCGGCAATGAACACTGGTGCAGCCGCGCCGCCGGCAGTAAGGCAAGTGAAATTGGAAAAGGAAAGTGAACTTAGAATTG AAGCGGCAAACGAAACGCCGCTTCAGTTGAGGCTCCTAAACGGTACAGCTGAAATATTTGGCACCGAGCTTCCACCTGAAATTTGGCTCACATTCCCTCC TCGCTTAAAATTCGCTGTGTTTACTTGGTATGGTGCTACACTTGAGCTGGATGGCACCACGGAAACCGACTATACAGCTGATGAGACTCCTATGGTTAGT TATGTCAATGTGCATGCTATACTAGATGGGCGAAGGAACCAAGCTAAAGCTTCGTTTTCTGGGGACTCAGAACCCGTTGAGGGTCCTAGGGTGATTGTTG TTGGACCTACTGATTCGGGAAAGAGCACCTTATCGAGGATGCTGGTCAGTTGGGCATCTAAACAGGGTTGGAAACCAACATATGTTGACCTTGATATTGG TCAAGGGGCAATAACGATTCCTGGATGCATTGCTGCTACCCCCATAGAGTTGCCTATTGATCCAGTTGAAGGCATTCCCTTGGACATGCCACTAGTTTAT TTTTATGGTCACACGACTCCCAGTCAAAATGTGGAGTTGTATAAAACGCTTGTTAAAGAGCTAGCTGAAATACTAGAGAAACAATTTACTGGTAATGCTG AATCTCATGCTGCAGGCATGGTGATCAACACAATGGGGTGGATAGAAGGTGTAGGCTATGAGCTGCTGCTTCATGCAATTGATACGTTCAGTGCAAATGT TGTGTTGGTATTGGGACAGGAAAAACTTTTCAGCATGCTCAGGGATGTACTGAGGAGTAAGCCCAATGTGGATGTAGTCAAACTTCAAAAGTCAGGTGGT GTAGTATCTAGGAGTCCAAAACTCCGTCAGAAGTCGAGAAGTTACAAGATTAGGGAATACTTCTATGGAATTTCAAATGATCTATCCCCACATTCAAATA TTGCAAACTTCAACGATCTGTTTGTATATCGAATTGGTGGTGGGCCACAAGCCCCAAGATCTGCTCTTCCAATAGGCGCAGACCCTGTTTCCCACCCGCC CGGAGTCCCCCCCGCGAATATCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTTTATCTATGTCACTGCCATTGATCAT CAGAGGTTAGATTTTAGTAGCTTTTTACTTGTCAGAAACCTGTGTTCCATATCCTGA
AA sequence Show only first row Show all	>Lus10007269 pacid=23165699 polypeptide=Lus10007269 locus=Lus10007269.g ID=Lus10007269.BGIv1.0 annot-version=v1.0 MAYGGAASAMNTGAAAPPAVRQVKLEKESELRIEAANETPLQLRLLNGTAEIFGTELPPEIWLTFPPRLKFAVFTWYGATLELDGTTETDYTADETPMVS YVNVHAILDGRRNQAKASFSGDSEPVEGPRVIVVGPTDSGKSTLSRMLVSWASKQGWKPTYVDLDIGQGAITIPGCIAATPIELPIDPVEGIPLDMPLVY FYGHTTPSQNVELYKTLVKELAEILEKQFTGNAESHAAGMVINTMGWIEGVGYELLLHAIDTFSANVVLVLGQEKLFSMLRDVLRSKPNVDVVKLQKSGG VVSRSPKLRQKSRSYKIREYFYGISNDLSPHSNIANFNDLFVYRIGGGPQAPRSALPIGADPVSHPPGVPPANIXXXXXXXXXXXXXXXXXFIYVTAIDH QRLDFSSFLLVRNLCSIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04680		CLPS3	CLP-similar protein 3 (.1.2)		Lus10007269 [exp]	0	1
AT4G27760		FEY3, FEY	FOREVER YOUNG, NAD(P)-binding ...		Lus10009112 [exp]	7.0	0.8014
AT5G38830			Cysteinyl-tRNA synthetase, cla...		Lus10041428 [exp]	8.1	0.7281
AT3G17430			Nucleotide-sugar transporter f...		Lus10018339 [exp]	15.7	0.7455
					Lus10033992 [exp]	20.1	0.7739
AT1G08660		MGP2	MALE GAMETOPHYTE DEFECTIVE 2 (...		Lus10031992 [exp]	21.0	0.7213
AT5G38690			Zinc-finger domain of monoamin...		Lus10017575 [exp]	22.6	0.7910
AT5G57120			unknown protein		Lus10001434 [exp]	23.0	0.7646
AT5G59740			UDP-N-acetylglucosamine (UAA) ...		Lus10005881 [exp]	24.4	0.7614
AT1G11820			O-Glycosyl hydrolases family 1...		Lus10031456 [exp]	28.9	0.7719
AT3G55510		RBL	REBELOTE, Noc2p family (.1)		Lus10020167 [exp]	33.7	0.7764

Compare expression of checked genes

Lus10007269 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.