Plant FIBer expression Database

Lus10007271 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G28700 674 / 0 Protein of unknown function (DUF185) (.1), Protein of unknown function (DUF185) (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015353
[exp]
865 / 0 AT3G28700 706 / 0.0 Protein of unknown function (DUF185) (.1), Protein of unknown function (DUF185) (.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G077000
[exp]
695 / 0 AT3G28700 730 / 0.0 Protein of unknown function (DUF185) (.1), Protein of unknown function (DUF185) (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF02636 Methyltransf_28 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence
>Lus10007271 pacid=23165709 polypeptide=Lus10007271 locus=Lus10007271.g ID=Lus10007271.BGIv1.0 annot-version=v1.0
ATGCTGCTGAGGAAACTGCTATTGCGACGATCGGGGCATCTCTTCATCAATAATCCTACACCGGAATCATCAGTTTCTTCGCTAATCAGATGTATTCGAT
TTTCTTCCTCTTCCCAACCGCAAAGCCCAGACGATGGTTTTGTCGGCCGCCAGGAGAACGGCGAACAGCATCCGGCCGCCACCATTTCCGTCGACCGGTC
AGGACTCTATCATCTACCTGAGCATTCTCATGAACCCACGTCGGAGAGTGAACTGGTGAAGCACCTTAAAGGGATTATCAAGTCTTTTGATTTTTCTACG
ACTGATGGTTCTCAGTTTAGAGGAGGCCCAATCTCAGTGGCAGAGTACATGGAAGAAGTTTTGACGAACCCCAAGTTTGGGTTCTATATCAACCGAGATG
TATTTGGAACAGATGGTGATTTCATAACCTCTCCTGAGGTCAGCCAGATGTTTGGGGAGGTAGTTCTTGCTAACTCGGATCCTAATATTCTAATTAATGC
TTTTAAGATGATTGGTGTCTGGGCTATGTGTTTGTGGGAACAAATGGGACAACCAACAAAAGTCAATCTAGTTGAACTGGGACCGGGTCGAGGTACTCTC
ATGGTTGATCTATTGCGGGGTGCAGCAAAGTTCAAGAACTTTACAGCCTCGCTGCATATTCACTTGGTAGAATGCAGTCCTGTTCTGCAGAAGATACAGC
ATCAGAATCTAAAATGCGAGGATGAGGATGATGCAGGTGAAACAGGTGAAAGAAAAACAGTTAGTGCAATTACAGGAAGTCCTGTGACATGGTACTCTTC
ACTGGAGCAAGTTCCATCTGGATCTCCTACAATCATCCTCGCTCATGAGTTCTATGATGCTCTACCTGTCCACCAGTTTCAGAAGTCTTCTCGTGGTTGG
TCAGAAAAAATGGTTGACGTAGGAGACGATTCAAAGTTGCGCTTTGTTCTGTCCTCCCAGCCAACACCAGCCACTCTGTACTTGATGAAACGATGCAAGT
GGGCCAGTGCTAAAGAAGTAGAAAATCTTAATCAGATTGAGATTTGCCCCAAAGCAATTGACTTGACTCATTCAATTGCACAGAGAATTAGTTGTGATGG
AGGTGCAGCTTTGATAATCGACTATGGCCTCAATGGAGTGGTCTCGGATAGTTTGCAGGCGATCAGGAAACACAAGTTCGTCAACATACTGGATGATCCT
GGGTCTGCTGACCTCAGTGCATATGTCGATTTTGCTTCAATCAAGCACACAGCAGAGGAAGCTTCAGAAAATGTAGAGGCGCATGGGCCACTGATGCAGT
CTCAGTTTCTAGGACTACTGGGGATAAACTTCCGAGTAGAAGCATTGCTAGAGAGTTGTACGGATGAACAAGCAGAGTCGTTAAGAACAGGATACTGGCG
CTTGGTAGGGGAAGGGGAAGCCCCTTTCTGGGAAGGACCCGAGGAACTAACACCCATTGGGATGGGAACCAGGTACTTGGCAATGGCAATAGTCAACAAG
AAACAAGGCATTCCTGCTCCTTTCCAGTAA
AA sequence
>Lus10007271 pacid=23165709 polypeptide=Lus10007271 locus=Lus10007271.g ID=Lus10007271.BGIv1.0 annot-version=v1.0
MLLRKLLLRRSGHLFINNPTPESSVSSLIRCIRFSSSSQPQSPDDGFVGRQENGEQHPAATISVDRSGLYHLPEHSHEPTSESELVKHLKGIIKSFDFST
TDGSQFRGGPISVAEYMEEVLTNPKFGFYINRDVFGTDGDFITSPEVSQMFGEVVLANSDPNILINAFKMIGVWAMCLWEQMGQPTKVNLVELGPGRGTL
MVDLLRGAAKFKNFTASLHIHLVECSPVLQKIQHQNLKCEDEDDAGETGERKTVSAITGSPVTWYSSLEQVPSGSPTIILAHEFYDALPVHQFQKSSRGW
SEKMVDVGDDSKLRFVLSSQPTPATLYLMKRCKWASAKEVENLNQIEICPKAIDLTHSIAQRISCDGGAALIIDYGLNGVVSDSLQAIRKHKFVNILDDP
GSADLSAYVDFASIKHTAEEASENVEAHGPLMQSQFLGLLGINFRVEALLESCTDEQAESLRTGYWRLVGEGEAPFWEGPEELTPIGMGTRYLAMAIVNK
KQGIPAPFQ

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G28700 Protein of unknown function (D... Lus10007271
[exp]
0 1
AT4G16510 YbaK/aminoacyl-tRNA synthetase... Lus10008505
[exp]
8.4 0.8271
AT3G45140 ATLOX2, LOX2 ARABIODOPSIS THALIANA LIPOXYGE... Lus10041646
[exp]
16.6 0.8267
AT3G02420 unknown protein Lus10003064
[exp]
22.9 0.7545
AT5G64830 programmed cell death 2 C-term... Lus10021075
[exp]
25.3 0.7577
AT1G33970 P-loop containing nucleoside t... Lus10005299
[exp]
30.7 0.8366
AT5G14610 DEAD box RNA helicase family p... Lus10014553
[exp]
47.4 0.8196
AT1G68080 2-oxoglutarate (2OG) and Fe(II... Lus10034428
[exp]
51.6 0.7629
AT1G17370 UBP1B oligouridylate binding protein... Lus10027641
[exp]
66.7 0.7628
Lus10004960
[exp]
127.7 0.7496
AT5G50970 transducin family protein / WD... Lus10043205
[exp]
152.1 0.7388

Lus10007271 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.