Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42610 236 / 5e-80 LSH10 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) AT4G18610 213 / 1e-70 LSH9 LIGHT SENSITIVE HYPOCOTYLS 9, Protein of unknown function (DUF640) (.1) AT1G78815 206 / 8e-68 LSH7 LIGHT SENSITIVE HYPOCOTYLS 7, Protein of unknown function (DUF640) (.1) AT1G07090 204 / 4e-67 LSH6 LIGHT SENSITIVE HYPOCOTYLS 6, Protein of unknown function (DUF640) (.1) AT5G58500 201 / 6e-66 LSH5 LIGHT SENSITIVE HYPOCOTYLS 5, Protein of unknown function (DUF640) (.1) AT3G23290 190 / 1e-61 LSH4 LIGHT SENSITIVE HYPOCOTYLS 4, Protein of unknown function (DUF640) (.2) AT1G16910 186 / 2e-60 LSH8 LIGHT SENSITIVE HYPOCOTYLS 8, Protein of unknown function (DUF640) (.1) AT2G31160 187 / 3e-60 OBO1, LSH3 ORGAN BOUNDARY 1, LIGHT SENSITIVE HYPOCOTYLS 3, Protein of unknown function (DUF640) (.1) AT3G04510 182 / 2e-58 LSH2 LIGHT SENSITIVE HYPOCOTYLS 2, Protein of unknown function (DUF640) (.1) AT5G28490 180 / 1e-57 OBO2, LSH1 ORGAN BOUNDARY 2, LIGHT-DEPENDENT SHORT HYPOCOTYLS 1, Protein of unknown function (DUF640) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029219 [exp] 328 / 4e-116 AT2G42610 238 / 6e-81 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) Lus10029838 [exp] 236 / 1e-79 AT2G42610 261 / 3e-90 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) Lus10020700 [exp] 231 / 1e-77 AT2G42610 258 / 1e-88 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) Lus10042565 [exp] 200 / 1e-65 AT5G28490 233 / 1e-78 ORGAN BOUNDARY 2, LIGHT-DEPENDENT SHORT HYPOCOTYLS 1, Protein of unknown function (DUF640) (.1) Lus10022023 [exp] 199 / 2e-65 AT1G07090 226 / 3e-76 LIGHT SENSITIVE HYPOCOTYLS 6, Protein of unknown function (DUF640) (.1) Lus10023383 [exp] 182 / 3e-58 AT1G07090 246 / 2e-83 LIGHT SENSITIVE HYPOCOTYLS 6, Protein of unknown function (DUF640) (.1) Lus10038424 [exp] 181 / 1e-57 AT1G07090 247 / 9e-84 LIGHT SENSITIVE HYPOCOTYLS 6, Protein of unknown function (DUF640) (.1) Lus10024901 [exp] 181 / 2e-57 AT2G31160 249 / 3e-84 ORGAN BOUNDARY 1, LIGHT SENSITIVE HYPOCOTYLS 3, Protein of unknown function (DUF640) (.1) Lus10022918 [exp] 181 / 2e-57 AT2G31160 249 / 4e-84 ORGAN BOUNDARY 1, LIGHT SENSITIVE HYPOCOTYLS 3, Protein of unknown function (DUF640) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G057300 [exp] 243 / 1e-82 AT2G42610 241 / 2e-82 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) Potri.011G066400 [exp] 238 / 8e-81 AT2G42610 238 / 5e-81 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) Potri.014G142400 [exp] 231 / 4e-78 AT2G42610 259 / 1e-89 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) Potri.001G390900 [exp] 229 / 3e-77 AT1G78815 242 / 2e-82 LIGHT SENSITIVE HYPOCOTYLS 7, Protein of unknown function (DUF640) (.1) Potri.011G109900 [exp] 228 / 1e-76 AT2G42610 238 / 3e-81 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) Potri.002G214200 [exp] 225 / 9e-76 AT2G42610 240 / 5e-82 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) Potri.009G076100 [exp] 213 / 3e-70 AT1G07090 259 / 2e-88 LIGHT SENSITIVE HYPOCOTYLS 6, Protein of unknown function (DUF640) (.1) Potri.001G281000 [exp] 207 / 6e-68 AT1G07090 251 / 4e-85 LIGHT SENSITIVE HYPOCOTYLS 6, Protein of unknown function (DUF640) (.1) Potri.009G157600 [exp] 194 / 2e-63 AT5G28490 228 / 7e-77 ORGAN BOUNDARY 2, LIGHT-DEPENDENT SHORT HYPOCOTYLS 1, Protein of unknown function (DUF640) (.1) Potri.010G070700 [exp] 188 / 1e-60 AT2G31160 226 / 3e-75 ORGAN BOUNDARY 1, LIGHT SENSITIVE HYPOCOTYLS 3, Protein of unknown function (DUF640) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04852 [flax] [poplar] DUF640 Protein of unknown function (DUF640)
Representative CDS sequence Show only first row Show all	>Lus10007272 pacid=23142459 polypeptide=Lus10007272 locus=Lus10007272.g ID=Lus10007272.BGIv1.0 annot-version=v1.0 ATGTCATCATCGGAGCAAAATTTAACGATAGGAGTGGAGGGATCCTCCTCCACTTCCAGAACCAACCACCACCACCATCACAACCCGCCGCCGCTGAGCC GGTACGAGTCGCAGAAGAGGCGGGACTGGAACACGTTCGGGCAGTACTTGAAGAACCAGAGGCCGCCCGTTTCAGTTTCCCACTGCGGGTCGGTCCACGT GCTGGACTTCCTCCGATACTTAGACCAGTTCGGGAAGACCAAAGTCCACCTAAACGGCTGCGCCTTCTTCGGGCAGCCGGACCCACCTGCTCCGTGCACC TGCCCGCTCAGGCAGGCGTGGGGAAGCCTGGACGCGCTCATAGGCAGGCTGAAGGCTGCCTATGAGGAGCACGGCGGGTCTCCCGAGACCAACCCATTCG GAAACGGGGCGATCCGGGTTTACCTGAGGGAAGTGAGGGAGTGCCAGGCCAAGGCTAGAGGGATTCCGTACAAGAAAAAGAAGAAGAAGAAGGTTATTGG CCATCATAACAAGGTGGCGGCCGTTGGTAGGGATAATTGTCGTCTTGATGGCGGCGGTGGTGGTAATAAGTCGGCGGCGGCGGCTGCTGCTGCTCCTATG CCGCAGTGA
AA sequence Show only first row Show all	>Lus10007272 pacid=23142459 polypeptide=Lus10007272 locus=Lus10007272.g ID=Lus10007272.BGIv1.0 annot-version=v1.0 MSSSEQNLTIGVEGSSSTSRTNHHHHHNPPPLSRYESQKRRDWNTFGQYLKNQRPPVSVSHCGSVHVLDFLRYLDQFGKTKVHLNGCAFFGQPDPPAPCT CPLRQAWGSLDALIGRLKAAYEEHGGSPETNPFGNGAIRVYLREVRECQAKARGIPYKKKKKKKVIGHHNKVAAVGRDNCRLDGGGGGNKSAAAAAAAPM PQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42610		LSH10	LIGHT SENSITIVE HYPOCOTYLS 10,...		Lus10007272 [exp]	0	1
AT1G13130			Cellulase (glycosyl hydrolase ...		Lus10006462 [exp]	1.4	0.9329
AT2G19580		TET2	tetraspanin2 (.1)		Lus10040551 [exp]	2.0	0.9063
AT5G25280			serine-rich protein-related (....		Lus10038100 [exp]	2.4	0.9138
AT1G13130			Cellulase (glycosyl hydrolase ...		Lus10011404 [exp]	3.0	0.9099
AT3G09032			unknown protein		Lus10027777 [exp]	4.9	0.8714
AT1G29950	bHLH		basic helix-loop-helix (bHLH) ...		Lus10004926 [exp]	5.0	0.8933
AT3G05200		ATL6	RING/U-box superfamily protein...		Lus10031515 [exp]	5.3	0.8912
AT3G63110		ATIPT3	isopentenyltransferase 3 (.1)		Lus10012372 [exp]	5.5	0.8752
AT1G49780		PUB26	plant U-box 26 (.1)		Lus10014073 [exp]	8.7	0.8445
AT3G60690			SAUR-like auxin-responsive pro...		Lus10009286 [exp]	8.8	0.8928

Compare expression of checked genes

Lus10007272 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.