Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58630 139 / 1e-38 Trihelix sequence-specific DNA binding transcription factors (.1) AT5G05550 125 / 5e-34 Trihelix sequence-specific DNA binding transcription factors (.1.2) AT3G14180 127 / 2e-33 Trihelix ASIL2 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) AT3G11100 118 / 1e-31 Trihelix sequence-specific DNA binding transcription factors (.1) AT1G54060 102 / 2e-24 Trihelix ASIL1 6B-interacting protein 1-like 1 (.1) AT3G10030 84 / 6e-18 Trihelix aspartate/glutamate/uridylate kinase family protein (.1.2) AT3G54390 82 / 1e-17 Trihelix sequence-specific DNA binding transcription factors (.1) AT3G24490 74 / 9e-15 Trihelix Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) AT2G44730 64 / 3e-11 Trihelix Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) AT3G24860 61 / 2e-10 Trihelix Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025406 [exp] 206 / 5e-65 AT3G14180 202 / 3e-63 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10025404 [exp] 203 / 5e-64 AT3G14180 197 / 1e-61 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10015282 [exp] 197 / 5e-63 AT3G58630 140 / 3e-41 sequence-specific DNA binding transcription factors (.1) Lus10029220 [exp] 144 / 4e-43 AT3G14180 74 / 4e-17 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10015281 [exp] 109 / 1e-29 AT3G58630 79 / 2e-18 sequence-specific DNA binding transcription factors (.1) Lus10008141 [exp] 109 / 4e-27 AT3G14180 271 / 3e-87 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10013179 [exp] 109 / 5e-27 AT3G14180 256 / 5e-81 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10020652 [exp] 110 / 8e-27 AT5G16860 344 / 2e-106 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028984 [exp] 82 / 4e-19 AT3G14180 86 / 7e-21 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G113600 [exp] 193 / 6e-60 AT3G58630 138 / 1e-38 sequence-specific DNA binding transcription factors (.1) Potri.003G118600 [exp] 191 / 5e-59 AT3G58630 139 / 5e-39 sequence-specific DNA binding transcription factors (.1) Potri.001G026000 [exp] 120 / 3e-31 AT3G14180 186 / 1e-54 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Potri.008G071300 [exp] 117 / 7e-31 AT5G05550 209 / 3e-67 sequence-specific DNA binding transcription factors (.1.2) Potri.T126206 [exp] 118 / 1e-30 AT3G14180 173 / 9e-50 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Potri.003G200000 [exp] 116 / 8e-30 AT3G14180 172 / 2e-49 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Potri.003G195300 [exp] 84 / 5e-18 AT3G54390 288 / 2e-96 sequence-specific DNA binding transcription factors (.1) Potri.010G186200 [exp] 81 / 1e-17 AT5G05550 149 / 3e-44 sequence-specific DNA binding transcription factors (.1.2) Potri.001G028400 [exp] 81 / 3e-17 AT3G54390 297 / 6e-100 sequence-specific DNA binding transcription factors (.1) Potri.001G179800 [exp] 81 / 8e-17 AT3G24490 206 / 2e-63 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007273 pacid=23142494 polypeptide=Lus10007273 locus=Lus10007273.g ID=Lus10007273.BGIv1.0 annot-version=v1.0 ATGGGCGACCTTATCACCGCCGATTCCGGCACCCCCAACCCCACCTCCGCCACCACCCGCCGCGCTCCCCCCCCCACCCCCACCCCCGCCACCACCCGCC CCGTTCCGATCCGGGAAGACTGCTGGAGCGAAGAAGCCACCGCGACTCTCGTCGAAGCCTGGGGTAACCGCTACCTGGAGCTCAACCGCGGCAACCTCCG CCAGAAGGACTGGAAGGACGTCGCCGACGCCGTCAACGCCGTCCACGGCCTCACCAAGAAGACCCACCGCACCGATGTCCAGTGCAAAAATCGCGTCGAC ACCGTGAAGAAGAAGTACAAGGCCGAGAAGGCACGCCTCACCGCCTCCAATGGTGCGATCCCTTCCTCCTGGCCGTTCTTCGACCGGCTGGATCACCTGA TCGGCCCTAATTTCTCATCCGCGGCGGCTTCTGGTAAAAAGTCGACGCCGACGTCGCAGCCGCAGTCGCATCAGTCTCCCTCGTCGCTGTCTCTGTCTCC GCCGGTAGCCTTGCCGCTGACGAGTTATCGGAAGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCAGAGCGCGAC GCGGTGCGGAACCACTCAGCGATGGGTGCTCGAGCGGCTGCGGCGGCGGCTGCTGAATCGGAGAGTGAGGAGGAGGAGATGGAGATGGAGAATGAGAAGG ATGAGGAAGGTGAAGGTGTGAGGAGGTTGGCTAGAGCTATTGAGAGGTTTGGGGATGTTTACGAGAGAGTTGAGGGGGAGAAATTGAGGCAGATGATTGA TCTGGAGAAGCAGAGGATGAAGTTTGCTAAAGATTTGGAAATGGAGAGGATGAGGATCTTCACTGAGACTCAGATCCAGCTCGAGAGGATCAAGAAAGGG AAGCGTTCTAATGGTGAGAGGGATTATTGA
AA sequence Show only first row Show all	>Lus10007273 pacid=23142494 polypeptide=Lus10007273 locus=Lus10007273.g ID=Lus10007273.BGIv1.0 annot-version=v1.0 MGDLITADSGTPNPTSATTRRAPPPTPTPATTRPVPIREDCWSEEATATLVEAWGNRYLELNRGNLRQKDWKDVADAVNAVHGLTKKTHRTDVQCKNRVD TVKKKYKAEKARLTASNGAIPSSWPFFDRLDHLIGPNFSSAAASGKKSTPTSQPQSHQSPSSLSLSPPVALPLTSYRKPXXXXXXXXXXXXXXXXXAERD AVRNHSAMGARAAAAAAAESESEEEEMEMENEKDEEGEGVRRLARAIERFGDVYERVEGEKLRQMIDLEKQRMKFAKDLEMERMRIFTETQIQLERIKKG KRSNGERDY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Lus10007273 [exp]	0	1
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Lus10029220 [exp]	1.0	0.9347
AT2G03190		ASK16	SKP1-like 16 (.1)		Lus10031747 [exp]	3.5	0.9169
AT5G37370		ATSRL1	PRP38 family protein (.1.2.3.4...		Lus10015203 [exp]	4.9	0.9159
AT3G20890			RNA-binding (RRM/RBD/RNP motif...		Lus10009943 [exp]	7.1	0.8754
AT5G18110		NCBP	novel cap-binding protein (.1)		Lus10005704 [exp]	7.5	0.8894
AT2G03170		ASK14	SKP1-like 14 (.1)		Lus10031171 [exp]	8.7	0.8761
AT5G43490			unknown protein		Lus10002352 [exp]	9.8	0.8670
AT1G03910			unknown protein		Lus10027605 [exp]	10.7	0.8469
AT1G07890		ATAPX01, CS1, A...	maternal effect embryo arrest ...		Lus10013537 [exp]	12.6	0.9010
AT2G37860		LCD1	LOWER CELL DENSITY 1, Protein ...		Lus10012657 [exp]	13.1	0.8748

Compare expression of checked genes

Lus10007273 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.