Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29260 528 / 0 PEX7, ATPEX7 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) AT3G49660 89 / 4e-20 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G35050 90 / 6e-20 NFC3, MSI3 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) AT5G58230 86 / 1e-18 MSI1, MEE70, ATMSI1 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) AT2G16780 80 / 2e-16 MSI02, NFC2, NFC02, MSI2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) AT4G18900 79 / 3e-16 Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 77 / 4e-15 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G25150 76 / 5e-15 TAF5 TBP-associated factor 5 (.1) AT1G52360 76 / 5e-15 Coatomer, beta' subunit (.1.2) AT3G15980 76 / 7e-15 Coatomer, beta' subunit (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029221 [exp] 668 / 0 AT1G29260 531 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Lus10039636 [exp] 93 / 2e-21 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10005074 [exp] 88 / 4e-19 AT4G35050 590 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10033459 [exp] 86 / 1e-18 AT5G58230 723 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10027848 [exp] 85 / 4e-18 AT4G35050 585 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10020917 [exp] 84 / 6e-18 AT5G58230 696 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10033460 [exp] 84 / 7e-18 AT5G58230 781 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10020916 [exp] 84 / 8e-18 AT5G58230 782 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 82 / 1e-17 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G057600 [exp] 581 / 0 AT1G29260 556 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Potri.011G066600 [exp] 383 / 1e-135 AT1G29260 379 / 3e-134 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Potri.005G148500 [exp] 94 / 7e-22 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G175300 [exp] 91 / 2e-20 AT2G16780 593 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.009G135100 [exp] 89 / 8e-20 AT2G16780 612 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.014G179700 [exp] 87 / 8e-19 AT5G58230 790 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G216200 [exp] 86 / 2e-18 AT5G58230 784 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G263400 [exp] 84 / 7e-18 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.007G009500 [exp] 83 / 7e-18 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.018G020200 [exp] 84 / 1e-17 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10007274 pacid=23142489 polypeptide=Lus10007274 locus=Lus10007274.g ID=Lus10007274.BGIv1.0 annot-version=v1.0 ATGAACCACTTCAAATCGCAGTTCAACGGCTACTCCGTCAAATTCAGCCCGTTCTACGAGGACCGCATCGCCGTCGCCACCGCACAGAACTTCGGCATCC TCGGAAACGGCCGCGTCCATGTGCTCACCGTCCCTCCAACCCCGGCCGCTCCGATGGGCGAGATCGTATCATTCGACACCGCCGACGGAGTCTACGATCT CGCCTGGTCCGAATCGCACGATTCCCTCCTCGTCGCAGCAGTGGCAGACGGCTCCGTCAAGCTCTTCGACACCAACCTCCCCCCGCCGCAGAACCCGCTC CGATCGTTTCAGGAGCACACCCGCGAGGTCCACTCCGTCGACTACAACCCCACCCGCCGCGACTCCTTCATCACCGCGTCGTGGGACGATACGGTAAAGC TCTGGACTTTAGATCGTTCTGCTAGCGTAAGAACGTTTAAAGAACACGCCTACTGTGTGTATTCGGCCGCCTGGAATCCGAGGCATACCGATGTATTCGC ATCGGCTTCTGGTGATTGTACCGTTAGGGTTTGGGATGTTCGAGAGCCTGGGTCGACAATGATCATCCCGGGGCATGATTTCGAGATACTGTCGTGTGAT TGGAACAAGTATGATGAGTGTTTGATTGCTACTTCGTCGGTGGATAAGAGCATTAGGGTATGGGATGTGAGGAATTACAGAATGCCGATTACTACTTTGA ATGGTCATAGCTATGCTGTCAGAAAGGTGAAATTTTCGCCTCACCATCGGAATCTGATGGTGTCTTGCTCCTATGATATGACAGTTTGTATGTGGGATTT CATGGTTGATGATTCCTTGGTTGGGAGGTATGAACACCACACCGAGTTTGCTGTTGGTGTTGATTTGAGTGTGCTTGTCGAAGGGATGGTTGCGAGTACT GGATGGGACGAGATGGTTTTCGTCTGGCAGCATGGAGCTGGCGGCCCTCCTAGAGGGCCTTGA
AA sequence Show only first row Show all	>Lus10007274 pacid=23142489 polypeptide=Lus10007274 locus=Lus10007274.g ID=Lus10007274.BGIv1.0 annot-version=v1.0 MNHFKSQFNGYSVKFSPFYEDRIAVATAQNFGILGNGRVHVLTVPPTPAAPMGEIVSFDTADGVYDLAWSESHDSLLVAAVADGSVKLFDTNLPPPQNPL RSFQEHTREVHSVDYNPTRRDSFITASWDDTVKLWTLDRSASVRTFKEHAYCVYSAAWNPRHTDVFASASGDCTVRVWDVREPGSTMIIPGHDFEILSCD WNKYDECLIATSSVDKSIRVWDVRNYRMPITTLNGHSYAVRKVKFSPHHRNLMVSCSYDMTVCMWDFMVDDSLVGRYEHHTEFAVGVDLSVLVEGMVAST GWDEMVFVWQHGAGGPPRGP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29260		PEX7, ATPEX7	ARABIDOPSIS PEROXIN 7, peroxin...		Lus10007274 [exp]	0	1
AT5G11770			NADH-ubiquinone oxidoreductase...		Lus10032155 [exp]	1.4	0.9266
AT4G39820			Tetratricopeptide repeat (TPR)...		Lus10016067 [exp]	1.4	0.9151
AT3G08780			unknown protein		Lus10014237 [exp]	4.2	0.9111
AT1G79870			D-isomer specific 2-hydroxyaci...		Lus10035866 [exp]	5.2	0.9150
AT5G41670			6-phosphogluconate dehydrogena...		Lus10032341 [exp]	6.0	0.9129
AT2G20760			Clathrin light chain protein (...		Lus10018480 [exp]	7.1	0.9129
AT3G07270			GTP cyclohydrolase I (.1.2)		Lus10003152 [exp]	7.1	0.8776
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Lus10017404 [exp]	7.5	0.9080
AT4G02040			unknown protein		Lus10019069 [exp]	8.9	0.8808
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10016645 [exp]	9.0	0.8939

Compare expression of checked genes

Lus10007274 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.