Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29240 150 / 3e-39 Protein of unknown function (DUF688) (.1) AT4G18630 104 / 9e-24 Protein of unknown function (DUF688) (.1) AT2G30990 102 / 1e-22 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3) AT2G34170 89 / 1e-18 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2) AT5G45850 71 / 9e-13 Protein of unknown function (DUF688) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029223 [exp] 870 / 0 AT1G29240 168 / 5e-45 Protein of unknown function (DUF688) (.1) Lus10025403 [exp] 397 / 2e-132 AT4G18630 167 / 9e-45 Protein of unknown function (DUF688) (.1) Lus10015280 [exp] 362 / 5e-118 AT5G45850 170 / 2e-45 Protein of unknown function (DUF688) (.1) Lus10033602 [exp] 89 / 2e-18 AT2G30990 169 / 5e-45 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3) Lus10017644 [exp] 78 / 9e-15 AT2G30990 160 / 9e-42 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3) Lus10029830 [exp] 62 / 5e-10 AT2G30990 139 / 2e-35 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3) Lus10020709 [exp] 56 / 4e-08 AT2G30990 130 / 1e-32 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3) Lus10022661 [exp] 51 / 1e-06 AT3G51760 79 / 6e-17 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3), Protein of unknown function (DUF688) (.4) Lus10012510 [exp] 44 / 0.0004 AT3G51770 178 / 3e-35 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G057800 [exp] 285 / 1e-87 AT1G29240 206 / 1e-57 Protein of unknown function (DUF688) (.1) Potri.011G067000 [exp] 266 / 2e-80 AT1G29240 156 / 2e-40 Protein of unknown function (DUF688) (.1) Potri.014G142800 [exp] 116 / 3e-27 AT2G30990 252 / 8e-75 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3) Potri.016G123700 [exp] 55 / 4e-08 AT3G51760 87 / 7e-20 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3), Protein of unknown function (DUF688) (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05097 [flax] [poplar] DUF688 Protein of unknown function (DUF688)
Representative CDS sequence Show only first row Show all	>Lus10007276 pacid=23142485 polypeptide=Lus10007276 locus=Lus10007276.g ID=Lus10007276.BGIv1.0 annot-version=v1.0 ATGGAGGAAAGAAAGCTGAATCTGAATGCACCACTTCTCTCAGTGAGGAGGTTCTCTTCTCCTATTAGGACTGCAGAAGTTGTAAAAGATAACCAGATAG AGAATCCAAAGCTGGACAGGAGTACTACTCGTAATAATACAGACTCGAGCTTGGAGCAAGTAACTGAGCCTGTTGCAGTACCTTTCCACTGGGAGCAAAT TCCAGGCAGAAGAAAGGATGCTCGTGAAGGGAGTGTGGCAGTGGCTTCTCCAAGGTTTCCTATCAGATGGGTTCCAGGTATTGTGAAGAATCAGGACGAC AAGAGAGGACTCAAAGTTCAGACATCTGTAACACTGCCGAAACAGAAATTATCCAGTGCTTTGAACCACAAAGCGGCTGCTGCTATTACTAATGCTAATG TTGGTGAAGAAGATGATGACAAGTACTCTGATGCACTTGAATCATTATCAGGAACCGATTCTTGTTCTATGAAGTGTAGTGTGAGTGGTGAATCATTATC AGATACAGATTGTGCTGTGGTGGGTAAGTCATCTGGGACGTTTTCCACCGATCCACAGACTCGAGATTTCATGATGAGGCGATTCTTGCCTGCTGCAAAG GCAATGGCTTTGGAGCAACCTCATTATGCTACTACTGCGAAGAAGCAGCAGCCTACAATGGTGGTAGAGCCGCCACAACCAATTAGGCAGATTGTAAATA TGGCTGCTGCTCGTGGGGATAAGTCTCCTACAGTTAGACGTTGGGAGTCTGCTCTAGTCCCGTACTACCCCAAGGATCTAGAGCCCGATCAAGGAAGTGA TCAAGAAGAGGAGGATGATCAGTCTGTGAATTTACCAAGTAAAGCTTGTGGATTCTTCCCACGTCTATGCTTTAAGAATTCAGTGTGCCTGTTGAATCCT GTTCCTGGGATGAAAATAAAAAGCCTCCCTTCTTTGTCTTCTTGCTCCACTCCGAAAACCAAAAAGCCAAGCAAAACTCCTTCTAGTCGTTCCAGTAGCC CTTTTTCCAGAAAGAAGGATGCTTCACGCCCACAAAGCCCAAGCCGTGGAGCTCAATCACCAAGGCTAGCCAATGGTGGATCCGATAGTTTCAATAACGC GCAGGACAGGCAAATGGCTGGGAGAATATCTCCGTTCAGTAGACGCTCAGGTGGGCTATCGCCGTACCGAAGTAGCGCACCACAATCTCCTTTCAGATCA GGACCAGTAGGAGTATCTAAAGAAGCTGAGATGTTGAAGGCAAGCAAGCCGTATCTTTACTGCAAAGGCGGCAGCAAGTCTCAAGAGCTAACACCTAATC TTCAACGCATTGGACAAGAGAAGACTCTTCCAAGTCCTGTTCGCGGAGAATCGAAGGCCTTGGTGTGTGTAACTGGAAACGAGTCGCCACTTCCTCTGCC TAAAACGCCTTCAGAGTCGTGGCTATGGCGGACTATGCCTGCTAGGAACTCGTTTGATCGTGCCGCTAGTTTCCAGGGCAAGTGGATGGATTCGAAGAGT AGCAAGTGGGAGACTATGGTGAAATCGTCGTATATGCATCATGATCATGTCCGCTATTCAGAGGTTAGTAGGTCCGCCATTCTTCTCTTGTGA
AA sequence Show only first row Show all	>Lus10007276 pacid=23142485 polypeptide=Lus10007276 locus=Lus10007276.g ID=Lus10007276.BGIv1.0 annot-version=v1.0 MEERKLNLNAPLLSVRRFSSPIRTAEVVKDNQIENPKLDRSTTRNNTDSSLEQVTEPVAVPFHWEQIPGRRKDAREGSVAVASPRFPIRWVPGIVKNQDD KRGLKVQTSVTLPKQKLSSALNHKAAAAITNANVGEEDDDKYSDALESLSGTDSCSMKCSVSGESLSDTDCAVVGKSSGTFSTDPQTRDFMMRRFLPAAK AMALEQPHYATTAKKQQPTMVVEPPQPIRQIVNMAAARGDKSPTVRRWESALVPYYPKDLEPDQGSDQEEEDDQSVNLPSKACGFFPRLCFKNSVCLLNP VPGMKIKSLPSLSSCSTPKTKKPSKTPSSRSSSPFSRKKDASRPQSPSRGAQSPRLANGGSDSFNNAQDRQMAGRISPFSRRSGGLSPYRSSAPQSPFRS GPVGVSKEAEMLKASKPYLYCKGGSKSQELTPNLQRIGQEKTLPSPVRGESKALVCVTGNESPLPLPKTPSESWLWRTMPARNSFDRAASFQGKWMDSKS SKWETMVKSSYMHHDHVRYSEVSRSAILLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29240			Protein of unknown function (D...		Lus10007276 [exp]	0	1
AT4G17090		CT-BMY, BMY8, B...	BETA-AMYLASE 8, BETA-AMYLASE 3...		Lus10011035 [exp]	2.4	0.8802
AT1G23400		CAF2, ATCAF2	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10013029 [exp]	6.0	0.8773
AT5G14260			Rubisco methyltransferase fami...		Lus10041585 [exp]	11.7	0.8706
AT5G58870		FTSH9	FTSH protease 9 (.1)		Lus10018210 [exp]	12.0	0.8293
AT2G30390		FC2, FC-II, ATF...	ferrochelatase 2 (.1.2)		Lus10004292 [exp]	15.2	0.8477
AT3G06080		TBL10	TRICHOME BIREFRINGENCE-LIKE 10...		Lus10003734 [exp]	15.3	0.7185
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039433 [exp]	16.9	0.8231
AT4G34730			ribosome-binding factor A fami...		Lus10018065 [exp]	17.7	0.8405
AT1G32220			NAD(P)-binding Rossmann-fold s...		Lus10012127 [exp]	18.7	0.8414
AT1G07180		NDA1, ATNDI1	ARABIDOPSIS THALIANA INTERNAL ...		Lus10040657 [exp]	19.4	0.8120

Compare expression of checked genes

Lus10007276 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.