Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04660 69 / 1e-12 F-box and associated interaction domains-containing protein (.1) AT1G47790 62 / 2e-10 F-box and associated interaction domains-containing protein (.1) AT4G38870 61 / 5e-10 F-box and associated interaction domains-containing protein (.1) AT1G47765 58 / 5e-09 F-box and associated interaction domains-containing protein (.1) AT1G32420 57 / 9e-09 F-box and associated interaction domains-containing protein (.1) AT1G47340 56 / 2e-08 F-box and associated interaction domains-containing protein (.1) AT2G31470 56 / 3e-08 DOR DROUGHT TOLERANCE REPRESSOR, F-box and associated interaction domains-containing protein (.1) AT2G02660 55 / 7e-08 F-box associated ubiquitination effector family protein (.1) AT5G50220 54 / 8e-08 F-box family protein (.1) AT2G15640 54 / 1e-07 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007285 [exp] 819 / 0 AT3G04660 82 / 7e-17 F-box and associated interaction domains-containing protein (.1) Lus10011210 [exp] 371 / 8e-125 AT1G32420 87 / 7e-19 F-box and associated interaction domains-containing protein (.1) Lus10011190 [exp] 357 / 2e-118 AT1G32420 78 / 1e-15 F-box and associated interaction domains-containing protein (.1) Lus10013934 [exp] 348 / 2e-116 AT1G11270 72 / 7e-14 F-box and associated interaction domains-containing protein (.1.2.3) Lus10016866 [exp] 338 / 8e-110 AT1G32420 84 / 2e-17 F-box and associated interaction domains-containing protein (.1) Lus10018460 [exp] 293 / 2e-95 AT1G32420 66 / 9e-12 F-box and associated interaction domains-containing protein (.1) Lus10011197 [exp] 296 / 5e-95 AT1G47790 86 / 6e-18 F-box and associated interaction domains-containing protein (.1) Lus10007606 [exp] 248 / 3e-79 AT1G47790 67 / 3e-12 F-box and associated interaction domains-containing protein (.1) Lus10026616 [exp] 238 / 2e-75 AT1G47790 77 / 1e-15 F-box and associated interaction domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G074084 [exp] 73 / 7e-14 AT1G11270 83 / 1e-17 F-box and associated interaction domains-containing protein (.1.2.3) Potri.001G458400 [exp] 70 / 1e-12 AT2G31470 113 / 8e-28 DROUGHT TOLERANCE REPRESSOR, F-box and associated interaction domains-containing protein (.1) Potri.004G000900 [exp] 55 / 5e-08 AT4G12560 87 / 2e-18 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G035500 [exp] 55 / 7e-08 AT4G12560 271 / 3e-87 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G318300 [exp] 52 / 5e-07 AT3G06240 140 / 7e-38 F-box family protein (.1) Potri.019G062900 [exp] 52 / 5e-07 AT1G50870 69 / 1e-12 F-box and associated interaction domains-containing protein (.1) Potri.017G058000 [exp] 49 / 4e-06 AT3G06240 138 / 5e-37 F-box family protein (.1) Potri.008G144000 [exp] 47 / 2e-05 AT4G38870 97 / 6e-22 F-box and associated interaction domains-containing protein (.1) Potri.013G093100 [exp] 46 / 4e-05 AT1G50870 80 / 2e-16 F-box and associated interaction domains-containing protein (.1) Potri.012G099733 [exp] 42 / 0.0007 AT3G16210 92 / 2e-20 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0162 [flax] [poplar] FBA PF08268 [flax] [poplar] FBA_3 F-box associated domain CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10007277 pacid=23142462 polypeptide=Lus10007277 locus=Lus10007277.g ID=Lus10007277.BGIv1.0 annot-version=v1.0 ATGGGCGATCGAACGAAAAGAGGAAGAAGTAGAAGCCGAGATTTCAGTTTGAAACCTTATGTTAGGAAAAGTGAAGCTGCGAATGAGAAGAGGAGGAAGA AGAGGAAGGAGACGACGACCACAAATGAGAAGTATTGTAGTCTGAAACCTCATGGTAGGACAACAAATAAGAATGATTTTCATGACGATCTGGTAGCTAC CCAGATACTTAGCAGACTCCCAGCCAAGTCACTCATGCGGTTCAAGTCAGTCTGTAAAGGCTGGAAATTGATCATCGAACGAGATTCGCACTTCATCAAA TTACACCGCATCCGTTCACAAGCACGCCCCCCGCGTTTGTTGACGATCATCCGCAATTGTTTTCAAGGAGACATCCAAAGGACTGCTTCTTTTGATTTAT TTTCAGCCGATTTGGACAGTGTCGATGGTGGTGATGTCAGAGGAGCCACTGTTCAGAGCATAACGAGAGTGGTAATGTCGAATGGTCCGCCTGTTAGTGT TTTGGGACTTGTTCGGGGATTGCTTTGTTTAGTTGACAGGCACAACTCGGAGGTAATGGTTTACAATGTCAGCACCGGACAAGCAGTCACACCGTGGATC ACATCTACAGTCTGGAGTAGTCGAAAGTGTTCCTTGAGAAAACCGATATGTCAATTCGGATTCGACTCCGATACGGGAAAACATAAAGTTATTTTCGTGT GGCAAGATTCTCGTGTAGCAGCTTGTGAGGTGTTGACTGTAGGGGTGGACGCTAGTTGGAGAATAATTGATGCTGTACCTCCTAGATGTGAATACTCCGG AATTAAGTGTACTTATGCCGATGGTTCCATGTATTATATGCTCCGCAACAAGGGATTTGAAGATGTTTGGACCTTAGTGGCATTTGACATTGGGCCGGAG AAGTTTAGGATGATGAGGATTCCCAAATTCTGCAACTCCTCTATAACGGAACTGGATGGGTGTCTAACCGGGGTGCTTAACCGCCCCCAAACAGCGCTAA CGCAGAAGCTAATGAAATTTCATGATCGTAATAAAGAGCGAACGACATCATCTACTGCTGTTGTTAGTACAAGTGAAGAAGAAGATTGGAGTGAAGTTAG TATTGAAATGCCTTGGTATATATCTCCCGAGACGTTAGTCTTATATCATTCGATACCTGGGAAAGACCAGATTATCTTGGAAACCTATAATGGATCAGGT GAGCCTGCCTGCTTTTACTGTTACAACAGGATAAACAAGACTTTCAACAAGTTTGAAATCCAAGGAATTCCCTTACTTCCTGGTTGGAGAAGCTATTATA AACTTTTCGTAGAAGATCTTTTCCATGCTGCTGACTATTCAGCCCAGTGA
AA sequence Show only first row Show all	>Lus10007277 pacid=23142462 polypeptide=Lus10007277 locus=Lus10007277.g ID=Lus10007277.BGIv1.0 annot-version=v1.0 MGDRTKRGRSRSRDFSLKPYVRKSEAANEKRRKKRKETTTTNEKYCSLKPHGRTTNKNDFHDDLVATQILSRLPAKSLMRFKSVCKGWKLIIERDSHFIK LHRIRSQARPPRLLTIIRNCFQGDIQRTASFDLFSADLDSVDGGDVRGATVQSITRVVMSNGPPVSVLGLVRGLLCLVDRHNSEVMVYNVSTGQAVTPWI TSTVWSSRKCSLRKPICQFGFDSDTGKHKVIFVWQDSRVAACEVLTVGVDASWRIIDAVPPRCEYSGIKCTYADGSMYYMLRNKGFEDVWTLVAFDIGPE KFRMMRIPKFCNSSITELDGCLTGVLNRPQTALTQKLMKFHDRNKERTTSSTAVVSTSEEEDWSEVSIEMPWYISPETLVLYHSIPGKDQIILETYNGSG EPACFYCYNRINKTFNKFEIQGIPLLPGWRSYYKLFVEDLFHAADYSAQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04660			F-box and associated interacti...		Lus10007277 [exp]	0	1
AT3G04660			F-box and associated interacti...		Lus10007285 [exp]	1.0	0.9503
AT4G31130			Protein of unknown function (D...		Lus10026052 [exp]	2.8	0.9301
AT5G12010			unknown protein		Lus10024997 [exp]	3.7	0.9173
AT5G58950			Protein kinase superfamily pro...		Lus10011173 [exp]	8.1	0.9016
AT1G23800		ALDH2B7	aldehyde dehydrogenase 2B7 (.1...		Lus10029166 [exp]	12.5	0.9187
AT5G65495			unknown protein		Lus10012729 [exp]	16.5	0.9222
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10038827 [exp]	21.0	0.9165
					Lus10030943 [exp]	23.9	0.9135
AT4G08455			BTB/POZ domain-containing prot...		Lus10029732 [exp]	24.8	0.8943
AT1G71090			Auxin efflux carrier family pr...		Lus10036000 [exp]	25.2	0.9220

Compare expression of checked genes

Lus10007277 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.