Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14650 481 / 3e-162 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2) AT1G14640 437 / 9e-146 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1) AT4G16200 69 / 2e-12 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1) AT5G06520 69 / 6e-12 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1) AT3G49130 65 / 3e-11 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.1) AT5G12280 53 / 3e-07 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.2) AT2G43960 50 / 3e-06 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035958 [exp] 629 / 0 AT1G14650 886 / 0.0 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2) Lus10013966 [exp] 468 / 7e-159 AT1G14650 672 / 0.0 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2) Lus10025704 [exp] 303 / 8e-100 AT1G14650 346 / 4e-114 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2) Lus10025705 [exp] 188 / 2e-54 AT1G14650 365 / 5e-120 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2) Lus10015391 [exp] 59 / 2e-10 AT1G14650 119 / 4e-32 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G070700 [exp] 568 / 0 AT1G14650 810 / 0.0 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2) Potri.005G094600 [exp] 563 / 0 AT1G14650 814 / 0.0 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12230 [flax] [poplar] PRP21_like_P Pre-mRNA splicing factor PRP21 like protein PF01805 [flax] [poplar] Surp Surp module
Representative CDS sequence Show only first row Show all	>Lus10007278 pacid=23142455 polypeptide=Lus10007278 locus=Lus10007278.g ID=Lus10007278.BGIv1.0 annot-version=v1.0 ATGGATCGTAATGCCAAAAATGACAACTTCAAGTTTTTGAATCCTAATGAGCTGTATCATGCGTATTATCAACATTGTTTGTCCGAGTCTGTTCCATCTG TTGCTGATTATGATGGAACCGAAGCAGCTCCAAAGCCTGACATTGCCGCCCAATTTAGACTAGCATCTCGAAAGGTTCTTGAACCACCTGAAGCTGAGCA GTATACAGTTTGGCTTCCTGAAGGGATTACTGGAGAAGAACGTGATATTATTAAGCGGACGGCACAATTTGTAGCGCGAAATGGGCAAACATTCCTTACT GGGCTCACTAATAGGGAGATGAACAACCCCCAGTTCGACTTTATGAACCCAACCCACATCTTGTTTACTTTCTTCACAGGTCTTGCAGATGCCTATTTAA AAGTCCTGATGCTTCCAAAAGGTTTAACAGAGAAGTTGACGAACAGTGTTTCTGACATGACCACTGTGCTTGAGAGATGCTTGCATCGCATAGAGTGGGA GCGGTCACAGGAGCAGGCAAGACAGAGGGCCGAGGATGAGATTGAACAGGAGCGATTGCAAATGGCCATGATTGACTGGCATGATTTTGTTGTTGTGGAG ACCATAGCCTTTGCAGATGATGAAGACGATGAGTTGCCTGTTCCGATGCCTGTCATAAGGGGAAGCAAGGTAACGGCTGTGGAGGAAGGCGAAATTGTTG AACCTGGTGGGAAGGAGGTTGAAATGGAAATGGATGAAGATCAGGAGGTGAAGCTTGTTGAACAAGCAATTAGAACTGTGAAGAAGTGGAAGAGACCTGA GGAGAGGCTGCTGCCAGCTGAAAGAGATCCTACAAAGTTTGTTGTTTCCCCAATTACTGGTGAGGTAATTCCTATTAATGAGATGTCAGAACACATGAGG ATTTCCCTAATTGATCCCAAGTACAAGGAGCAAAAAGAGAGGATGTTTGCTAAGATTCGGGAGACCACTATTGCTGCAGATGATGAAATTTCTAAAAACA TTCCGCGCCTTGCACAAACCCGTCATGATATTTTTGGCACAACAGAGGAGGAGGTGTCTAATGCCCTTCAGGCTGAAATTCAGAAAAAGAAAGATGAGCA ACCAAAGCAGCAGGTTATATGGGATGGCCACACTGGAAGCATTGGGCGTACTGCTAACCAGGCGATGTCCCAAAGTCTTGGTGACCACGATCAAAATCGA TCTTGTATGGGTGGTGGACATCCTGTCCCTCTGCCAAGGCCACCGGGTATGCCATTGATGCCATCAATTCGTCCATCAAACATGCCTGCAGAACCACCTC CACCAGGGTCTCAGTTTTCTCCCATGCCAGTGCACCGTCCTTTTGCTGCTGTGCCTATTATGTCTATGCCTCCACCACACACGCATGCTATGGCCCCTCC TACACCCTTACCTCAGGCAGTTCCTCCACCACCTCCTCCTGAAGAACCTGAGGCAAAGAGGCAGAAGCTAGATGATTCAATGCTTATTCCAGAAGAGCAG TTTTTGACCCAGCATCCTGCATGGATTTGTTTTTTATTCTTTCTTGGACCTGCAAGCATCAATATTACTGTTCCAAGTGTTGATGAAGGAAATCTAAGAG GTCAAGTGCTGGACATTAGAGTAGAAGGAAATCTCTGA
AA sequence Show only first row Show all	>Lus10007278 pacid=23142455 polypeptide=Lus10007278 locus=Lus10007278.g ID=Lus10007278.BGIv1.0 annot-version=v1.0 MDRNAKNDNFKFLNPNELYHAYYQHCLSESVPSVADYDGTEAAPKPDIAAQFRLASRKVLEPPEAEQYTVWLPEGITGEERDIIKRTAQFVARNGQTFLT GLTNREMNNPQFDFMNPTHILFTFFTGLADAYLKVLMLPKGLTEKLTNSVSDMTTVLERCLHRIEWERSQEQARQRAEDEIEQERLQMAMIDWHDFVVVE TIAFADDEDDELPVPMPVIRGSKVTAVEEGEIVEPGGKEVEMEMDEDQEVKLVEQAIRTVKKWKRPEERLLPAERDPTKFVVSPITGEVIPINEMSEHMR ISLIDPKYKEQKERMFAKIRETTIAADDEISKNIPRLAQTRHDIFGTTEEEVSNALQAEIQKKKDEQPKQQVIWDGHTGSIGRTANQAMSQSLGDHDQNR SCMGGGHPVPLPRPPGMPLMPSIRPSNMPAEPPPPGSQFSPMPVHRPFAAVPIMSMPPPHTHAMAPPTPLPQAVPPPPPPEEPEAKRQKLDDSMLIPEEQ FLTQHPAWICFLFFLGPASINITVPSVDEGNLRGQVLDIRVEGNL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14650			SWAP (Suppressor-of-White-APri...		Lus10007278 [exp]	0	1
AT2G39210			Major facilitator superfamily ...		Lus10022614 [exp]	2.0	0.8479
AT2G18180			Sec14p-like phosphatidylinosit...		Lus10025988 [exp]	9.3	0.8587
AT1G31480		SGR2	shoot gravitropism 2 (SGR2) (....		Lus10003520 [exp]	29.1	0.8422
AT5G27210			Protein of unknown function, t...		Lus10018984 [exp]	31.1	0.8479
AT5G51680			hydroxyproline-rich glycoprote...		Lus10015024 [exp]	40.2	0.8474
AT1G01350	C3HZnF		Zinc finger (CCCH-type/C3HC4-t...		Lus10040914 [exp]	52.5	0.8369
AT4G16150	CAMTA		calmodulin binding;transcripti...		Lus10041126 [exp]	52.6	0.8405
AT3G11260	HD	WOX5B, WOX5	WUSCHEL related homeobox 5B, W...		Lus10040219 [exp]	65.8	0.8340
AT3G10550		MTM1, AtMTM1	Arabidopsis thaliana myotubula...		Lus10038641 [exp]	115.3	0.8037
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Lus10023430 [exp]	133.0	0.8197

Compare expression of checked genes

Lus10007278 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.