Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45840 558 / 0 Leucine-rich repeat protein kinase family protein (.1.2) AT4G18640 476 / 7e-159 MRH1 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) AT3G56050 310 / 5e-97 Protein kinase family protein (.1.2) AT2G40270 305 / 1e-95 Protein kinase family protein (.1.2) AT5G58540 284 / 3e-89 Protein kinase superfamily protein (.1.2.3) AT5G07150 285 / 6e-87 Leucine-rich repeat protein kinase family protein (.1) AT1G63430 213 / 3e-59 Leucine-rich repeat protein kinase family protein (.1.2) AT5G41180 192 / 5e-52 leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G54590 124 / 5e-30 CRLK1 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) AT2G20850 121 / 3e-28 SRF1 STRUBBELIG-receptor family 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029228 [exp] 804 / 0 AT5G45840 444 / 5e-151 Leucine-rich repeat protein kinase family protein (.1.2) Lus10025400 [exp] 578 / 0 AT5G45840 608 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10015277 [exp] 475 / 7e-159 AT5G45840 548 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10017439 [exp] 399 / 3e-129 AT5G45840 457 / 1e-152 Leucine-rich repeat protein kinase family protein (.1.2) Lus10007516 [exp] 397 / 3e-128 AT5G45840 463 / 4e-155 Leucine-rich repeat protein kinase family protein (.1.2) Lus10031290 [exp] 369 / 2e-117 AT4G18640 457 / 7e-153 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) Lus10031860 [exp] 365 / 2e-116 AT5G45840 491 / 4e-166 Leucine-rich repeat protein kinase family protein (.1.2) Lus10008486 [exp] 213 / 2e-59 AT1G63430 878 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10001489 [exp] 211 / 2e-58 AT1G63430 879 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G058100 [exp] 661 / 0 AT4G18640 694 / 0.0 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) Potri.011G067400 [exp] 659 / 0 AT4G18640 678 / 0.0 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) Potri.009G075400 [exp] 383 / 9e-123 AT2G40270 449 / 9e-152 Protein kinase family protein (.1.2) Potri.001G280200 [exp] 372 / 3e-118 AT2G40270 430 / 2e-144 Protein kinase family protein (.1.2) Potri.008G072100 [exp] 353 / 4e-112 AT2G40270 451 / 2e-153 Protein kinase family protein (.1.2) Potri.010G185300 [exp] 337 / 1e-105 AT2G40270 434 / 1e-146 Protein kinase family protein (.1.2) Potri.003G124800 [exp] 209 / 4e-58 AT1G63430 858 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.001G106600 [exp] 209 / 4e-58 AT1G63430 839 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.011G139700 [exp] 132 / 2e-31 AT1G17230 1363 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G415300 [exp] 126 / 8e-31 AT5G54590 633 / 0.0 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10007281 pacid=23142495 polypeptide=Lus10007281 locus=Lus10007281.g ID=Lus10007281.BGIv1.0 annot-version=v1.0 ATGGAGGGGAGATGGAATTCAGTTAGAGCCCATCTGTTGTGCTTCTTGGTTTTCATCATTACTGTTGAAATTCACGGTTCTAAATCACTTAATGATGAAG GTTTTATTTTGCTCCAATTTCGAGCAAATGTGAAATCCGACCCTCGTGGTGTTTTAGCCAATTGGAATCGTAGCAACAGCGAGCCTTGCACCTGGTTTGG TGTTCATTGCATCGCCGATAAAGTTCATATATTAGATATTGATGGTGTGGAGTGGCAATTGCATGCTTTTTGTAGGAACTTGAGTGGATGTTCTTTGCAA GGGACATTGTCACCCGAGATTGAAAAACTTACCCAGTTACGATATTTGTTTTTGCGCGACAATTCGTTCTCCGGTATCCTTCCCAAGCAAATTGGAAGAC TAAAAAAACTTGAGATACTAGATGTGAGAGATAATGAATTGACTGGAACAATTCCAACAGAAATTGGAAGATTACAGGCCTTAAAGTGTTTGTGGGTGAG TGGCAACAAATTTGAAGGTCCTATCCCAGGGGAAATGAGGAGACTTAAATTGTTGTCACAATTGAACTTAGATCATCAAACTCTTCCATATGCTTCAACC ACTGGAAATAAAGAGTTTGATCATAATGATATTTGGAGAATGAAGTTGAAACAACTAAGGATTACTATTTATTCACAAATAATCTCGATCGTTACATCTC TTGCTGATTACCTCAACAAATGGATGTTCGAAATTTTCTACTTGAGGGATGAATCTCCTGAACCTTGTAAAGGAGATTGCTATTGCCATGAACATGGTGC AACTGACCAACACCTTGTACAGAATGTAGACATGTTTGTAAAATTCACCCGTCGAAAACTCCAAGAATTAAAACCGACGACGATGATCATGAGCAACCTT GTGGCTGAAAATGCTAGTACTATAAAGCTACCATCCACTCAGGGGATCAACATTTTTCCAACAATCACAAGAGGAAGCGGTTCCTTCCTTGCCATACCGA ACTCGTCCCATCTAGCTCCAGCGTCTTCACCAACGGATGATACGTTTCGAGGCGATGCCGATGATAGCGTAACGAGTGATAACACTTCGAAAGGTCCGAT AAGTCACAACCATATATGGGACACATGGATGTACTTAGTTCTTGCTCTAGTGGTGGTTGTGCTGTTAGCTACCATAATGTTTATGATGATTGTGTGTCGC CGTAAAGGACCACGTCGTGGAGTGGAGTCTGTTGGACTCACTAGACAGCTCCAGAGAGCGCTAACTTCAGGGGTTCCTAAGTTGAACAGAACAGAGCTGG AAACTGCTTGCGAGGATTTCAGCAATATCATATACTCGTACGACGGCGCTACTATGTTCAAGGGGACACTGTCTAGCGGAGTTGAGATCGCCGTTATTTT AACCACGATAAATTCTCATAAAGAGTGGTCGAAAAATGCAGAGAACGCATATCGTAAAAAGGTATGTGATGATCATCTTAGTACTGGTACACTATCACTG TGCACTTTGGCACAGATTGATACACTGTCAAGAATCAACCACAGAAACTTCGTAAATCTCATTGGATTTTGCGAAGAAGATGAACCATTCAATAGGATGA TGGTGTTGGAATACGCTCCAAACGGGACGCTATTCGAACATATTCATGTTGAAGGAATGGAGCATCTTGACTGGACTTCAAGAGTGAGAATCATCATGGG TGTAGCTTATTGCCTGGAATATATGCATGAATTGACCCCTCCTGTGTCTCACACTAATTTGACTTCACATTCCATCTACTTGACCGACGACTACGCAGCA AAGATTGCAGAAGTCTCCTTTATGTCACAAGCAGCATCAAAAGCAAAACCCGTAAGTGAATACGGATCAGAACATTTCGAACCCCCAGTAGTGAGGGAAG ATCCTCAGATGAACGTCTACGGTTTCGGTCTTCTACTACTGGAAATTATATCTGGAAAGCTTCCGTACTCAGAAAAACAAGGGCCGATTGAGAAATGGGC GGCTGAATATTTTAGTAAGAGGGACAAACTGGGTGAAATAGTGGATCAAACGTTGAAGGCCTACAAGAGCAACGAACTGGAAGTGATATATGAGGTTGCT CAAGAATGTATGATATCGGATCCGAAACAGAGACCGAGTATGAAGATGATCGTTTCGAGATTAAGGGAAGTGATTAGCATTAAACCTGATCAAGCAGTGC CGAGGTTGTCTCCGTTGTGGTGGGCTGAACTCGAGTTGGAAGCAAGTTGA
AA sequence Show only first row Show all	>Lus10007281 pacid=23142495 polypeptide=Lus10007281 locus=Lus10007281.g ID=Lus10007281.BGIv1.0 annot-version=v1.0 MEGRWNSVRAHLLCFLVFIITVEIHGSKSLNDEGFILLQFRANVKSDPRGVLANWNRSNSEPCTWFGVHCIADKVHILDIDGVEWQLHAFCRNLSGCSLQ GTLSPEIEKLTQLRYLFLRDNSFSGILPKQIGRLKKLEILDVRDNELTGTIPTEIGRLQALKCLWVSGNKFEGPIPGEMRRLKLLSQLNLDHQTLPYAST TGNKEFDHNDIWRMKLKQLRITIYSQIISIVTSLADYLNKWMFEIFYLRDESPEPCKGDCYCHEHGATDQHLVQNVDMFVKFTRRKLQELKPTTMIMSNL VAENASTIKLPSTQGINIFPTITRGSGSFLAIPNSSHLAPASSPTDDTFRGDADDSVTSDNTSKGPISHNHIWDTWMYLVLALVVVVLLATIMFMMIVCR RKGPRRGVESVGLTRQLQRALTSGVPKLNRTELETACEDFSNIIYSYDGATMFKGTLSSGVEIAVILTTINSHKEWSKNAENAYRKKVCDDHLSTGTLSL CTLAQIDTLSRINHRNFVNLIGFCEEDEPFNRMMVLEYAPNGTLFEHIHVEGMEHLDWTSRVRIIMGVAYCLEYMHELTPPVSHTNLTSHSIYLTDDYAA KIAEVSFMSQAASKAKPVSEYGSEHFEPPVVREDPQMNVYGFGLLLLEIISGKLPYSEKQGPIEKWAAEYFSKRDKLGEIVDQTLKAYKSNELEVIYEVA QECMISDPKQRPSMKMIVSRLREVISIKPDQAVPRLSPLWWAELELEAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45840			Leucine-rich repeat protein ki...		Lus10007281 [exp]	0	1
AT4G35420		TKPR1, DRL1	tetraketide alpha-pyrone reduc...		Lus10006141 [exp]	1.0	0.9837
					Lus10040835 [exp]	1.4	0.9585
					Lus10009381 [exp]	2.4	0.9150
AT2G20710			Tetratricopeptide repeat (TPR)...		Lus10029335 [exp]	2.6	0.8279
AT5G25910		AtRLP52	receptor like protein 52 (.1)		Lus10016112 [exp]	2.8	0.8895
AT1G65810			P-loop containing nucleoside t...		Lus10035774 [exp]	3.2	0.8851
AT4G29035			Plant self-incompatibility pro...		Lus10019767 [exp]	5.7	0.8151
					Lus10004635 [exp]	6.0	0.8053
AT2G29880			unknown protein		Lus10005028 [exp]	6.0	0.7967
					Lus10041320 [exp]	6.0	0.8498

Compare expression of checked genes

Lus10007281 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.