Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18650 189 / 4e-60 transcription factor-related (.1) AT3G14880 88 / 7e-21 unknown protein AT4G18680 76 / 2e-16 unknown protein AT1G58330 73 / 3e-15 ZW2 transcription factor-related (.1) AT4G18690 73 / 5e-15 unknown protein AT1G09950 66 / 1e-12 RAS1 RESPONSE TO ABA AND SALT 1 (.1) AT5G45830 63 / 1e-11 ATDOG1, GSQ5, DOG1 GLUCOSE SENSING QTL 5, delay of germination 1 (.1) AT1G08320 56 / 4e-09 bZIP TGA9, bZIP21 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) AT1G77920 49 / 1e-06 bZIP bZIP transcription factor family protein (.1) AT1G22070 48 / 2e-06 bZIP TGA3 TGA1A-related gene 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029229 [exp] 396 / 2e-141 AT4G18650 207 / 2e-67 transcription factor-related (.1) Lus10039193 [exp] 91 / 2e-21 AT3G14880 135 / 5e-39 unknown protein Lus10042453 [exp] 88 / 2e-20 AT3G14880 145 / 3e-42 unknown protein Lus10013746 [exp] 86 / 7e-20 AT3G14880 141 / 5e-41 unknown protein Lus10013711 [exp] 85 / 1e-19 AT3G14880 251 / 2e-84 unknown protein Lus10039196 [exp] 85 / 2e-19 AT3G14880 135 / 1e-38 unknown protein Lus10027812 [exp] 72 / 7e-15 AT1G58330 116 / 1e-31 transcription factor-related (.1) Lus10025265 [exp] 69 / 3e-13 AT1G58330 122 / 3e-33 transcription factor-related (.1) Lus10015276 [exp] 66 / 2e-12 AT4G18690 204 / 6e-65 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G058200 [exp] 213 / 4e-69 AT4G18650 226 / 1e-74 transcription factor-related (.1) Potri.007G098800 [exp] 111 / 2e-29 AT3G14880 159 / 6e-48 unknown protein Potri.001G390100 [exp] 84 / 3e-19 AT3G14880 255 / 3e-86 unknown protein Potri.009G164300 [exp] 56 / 8e-09 AT1G08320 574 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Potri.006G058800 [exp] 55 / 1e-08 AT5G06839 540 / 0.0 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Potri.004G203400 [exp] 55 / 2e-08 AT1G08320 571 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Potri.016G049200 [exp] 53 / 8e-08 AT5G06839 551 / 0.0 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Potri.005G170500 [exp] 51 / 2e-07 AT1G77920 468 / 5e-166 bZIP transcription factor family protein (.1) Potri.002G090700 [exp] 49 / 9e-07 AT1G77920 444 / 1e-156 bZIP transcription factor family protein (.1) Potri.007G079900 [exp] 48 / 1e-06 AT5G10030 339 / 5e-117 OCS ELEMENT BINDING FACTOR 4, TGACG motif-binding factor 4 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007282 pacid=23142474 polypeptide=Lus10007282 locus=Lus10007282.g ID=Lus10007282.BGIv1.0 annot-version=v1.0 ATGCCGAAGAGCACCGTCGGAGCTCGGTTCGCCGAGTTCGAAGAGACATGGACGAGACAACTCGAGGCGTACCTCCGGGAGCTTATCACCGCCGCCATGG CCAATAACGACTCGGGGGCGGTGGAGTCCCTTGTGGCCAAGCTGACTCAACACCACAAGGGATACTACAGCGTGAAATGGGCCTTGGCCCACGAAGACGT GCTCCCTTTCTTCTCCCAACCATGGGCCTCCCCGCTGGAAAAGGCCTACTCGTGGTTCACCGGCTGGAAGCCGTCCACCATGTTCAAAATCATCCACGCC GAATTCGGCGCTGGCGGAGGAGGATTTCCTTCGAAGCTGGACCAGAGCCAGCTGGCGAGTATGGCGCAGCTGCGGCTCAAGGTGAAGCTGGAGGAGGATA AAGTGGAGAGGGACATGGAGAGGCAGCACGTGGCGCTGGCCGACACGAGGATGGTCGAGCTGGCGAGGGTGGCGAGCCGACGTGGTGATGATGACGTGGC GAAGGAGGCGGCTGGCCGCGTGGATGGGCTGGTTGAGGTGGCGCTGAAAGGGATGGCTGATGGGCTGGAGAAGGTGGTCAGGGCGGCGGATTGTGTCAGG CTCAGGACTTTGAAGGGTATTTTGGAGATTCTCACTCCCTTGCAGTCCGTGGCGTTTTTCGCTTCCAGTGCTGCTCTGTTGATTCGGCTAAGAAGGTTTG GGGTTATGAGGAGTAGAATGGTAAATTCCAAGTAG
AA sequence Show only first row Show all	>Lus10007282 pacid=23142474 polypeptide=Lus10007282 locus=Lus10007282.g ID=Lus10007282.BGIv1.0 annot-version=v1.0 MPKSTVGARFAEFEETWTRQLEAYLRELITAAMANNDSGAVESLVAKLTQHHKGYYSVKWALAHEDVLPFFSQPWASPLEKAYSWFTGWKPSTMFKIIHA EFGAGGGGFPSKLDQSQLASMAQLRLKVKLEEDKVERDMERQHVALADTRMVELARVASRRGDDDVAKEAAGRVDGLVEVALKGMADGLEKVVRAADCVR LRTLKGILEILTPLQSVAFFASSAALLIRLRRFGVMRSRMVNSK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18650			transcription factor-related (...		Lus10007282 [exp]	0	1
AT1G66980		GDPDL2, SNC4	Glycerophosphodiester phosphod...		Lus10025549 [exp]	3.5	0.6404
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Lus10020790 [exp]	5.9	0.6261
AT3G14880			unknown protein		Lus10013746 [exp]	6.9	0.6730
AT3G46790		CRR2	CHLORORESPIRATORY REDUCTION 2,...		Lus10001557 [exp]	14.7	0.6360
					Lus10040955 [exp]	18.7	0.6372
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10028837 [exp]	21.8	0.6233
AT4G05130		ATENT4	equilibrative nucleoside trans...		Lus10002590 [exp]	22.7	0.6261
AT3G14040			Pectin lyase-like superfamily ...		Lus10038316 [exp]	24.2	0.6007
AT2G29040			Exostosin family protein (.1)		Lus10003440 [exp]	35.7	0.6123
AT1G26610	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10036890 [exp]	41.6	0.5914

Compare expression of checked genes

Lus10007282 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.