Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45820 575 / 0 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) AT5G58380 496 / 8e-174 PKS2, CIPK10, SnRK3.8, SIP1 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) AT4G18700 494 / 4e-173 ATWL4, CIPK12, SnRK3.9 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) AT4G30960 477 / 5e-167 CIPK6, SIP3, SnRK3.14, ATCIPK6 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) AT5G45810 473 / 9e-165 CIPK19, SnRK3.5 SNF1-RELATED PROTEIN KINASE 3.5, CBL-interacting protein kinase 19 (.1) AT5G07070 466 / 3e-162 CIPK2, SnRK3.2 SNF1-RELATED PROTEIN KINASE 3.2, CBL-interacting protein kinase 2 (.1) AT5G01810 463 / 9e-162 ATPK10, SnRK3.1, SIP2, PKS3, CIPK15 SNF1-RELATED PROTEIN KINASE 3.1, SOS3-INTERACTING PROTEIN 2, PROTEIN KINASE 10, CBL-interacting protein kinase 15 (.1.2.3) AT5G10930 461 / 9e-161 CIPK5, SnRK3.24 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) AT5G25110 461 / 7e-160 CIPK25, SnRK3.25 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) AT1G30270 456 / 7e-158 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042229 [exp] 521 / 0 AT5G58380 676 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10022749 [exp] 517 / 0 AT5G58380 598 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10014163 [exp] 514 / 0 AT5G58380 592 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10021852 [exp] 502 / 8e-177 AT4G30960 658 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10036280 [exp] 501 / 3e-176 AT4G30960 662 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10024448 [exp] 476 / 5e-166 AT5G25110 654 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Lus10007448 [exp] 472 / 2e-164 AT5G25110 650 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Lus10015275 [exp] 473 / 4e-164 AT4G18700 736 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Lus10028115 [exp] 462 / 4e-161 AT1G30270 793 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G067500 [exp] 594 / 0 AT5G45820 647 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Potri.016G133500 [exp] 530 / 0 AT5G58380 593 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.019G048800 [exp] 524 / 0 AT5G58380 539 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.019G127500 [exp] 514 / 0 AT5G58380 641 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.013G156000 [exp] 505 / 5e-178 AT5G58380 623 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.006G186200 [exp] 503 / 5e-177 AT4G30960 649 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.018G108500 [exp] 494 / 8e-174 AT4G30960 639 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.006G263500 [exp] 475 / 5e-166 AT5G25110 568 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Potri.011G067600 [exp] 466 / 4e-161 AT4G18700 720 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Potri.004G058300 [exp] 462 / 1e-159 AT4G18700 735 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0573 [flax] [poplar] KA1-like PF03822 [flax] [poplar] NAF NAF domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10007283 pacid=23142465 polypeptide=Lus10007283 locus=Lus10007283.g ID=Lus10007283.BGIv1.0 annot-version=v1.0 ATGGAGAAGAAGAAGCCAGGGGCAATCCTAATGAGCAAATACGAGCTGGGAAAGCTGCTCGGGAAGGGCAACTTCGCCAAAGTGTACCACGCCCGCAACC TCCTGACGGGCCAAAACGTCGCCGTGAAAGTGATAGACAAGAGCAAGATCCCTGCCGGAATGACGGACCAGATCAAGCGAGAAATCTCCGTCATGAGCCT CGTCCGCCACCCCAACGTCGTCCACCTCTTCGAGGTCATGGCCAGCAGGTCCAAGATCTACTTCGTCATGGAGCTCGCTCGAGGAGGCGAGCTCTTCAAC CGGATAATCGCTGCCAAAGGTAGGCTTAAGGAGGAAACAGCGAGAAAATACTTCCAGCAATTGATCGCCGCCGTGGAATTTTGCCACAGCCGGGGAGTCT ACCACCGGGATTTGAAACCCGAGAATCTCCTGTTGGACGAACAGGGGAATTTGAAGGTTTCGGATTTCGGGTTGAGCGCGATCCGAGACGACTCGACCCG AAACGGAAACGACGGGCTTTTGCATACCACTTGTGGGACCCCAGCCTACGTTGCTCCTGAGGTGGTTATGAGGAGAGGATATGACGGGGCGAAGACGGAT GTATGGTCGTGCGGGGTCGTTTTGTTTGTTTTGTTAGCGGGTTATTTGCCGTTTCACGACGCGAATTTGATGGAGATGTATCGGAAAATCGCCCGGGGGA AATTTAAGTGTCCTAATTGGTTCAATCCGGAGGCTAGGAAGTTGGTTTCGAAGATTCTGGATCCTTCTCCGGCGAGGAGGATTACGATTGCGAGTATCAT GACGAATTCTTGGTTCCTGAAGGGGTTTAAGAAGATCGAAACGCCGAGGTCGCCTCAGGGGGATGACCGCCGAAATATGCTCCGGGACGTGGAAACGGCA TTCGACGGTAATATAAAGGATGACGGTGATAGTCCTACTTCGGTACTGCGACCGGCTTTTTACAACGCGTTCGACATCATTGCGCTGTCGAGAGGGTTCG ACCTGTCGGGGCTGTTTGACAACGGCGGACGGATTAAAGAAAGGGAGTCGAGGTTCATGACGAGGAGGACGGCGGAGGAGATAGTGAATAAGTTCGAGGA GATTGCGGCGAACGGAGGGTTTGAGGCGAGGAGGGAGGAGGGCGGTGGGACCACCGCGGTGAAGCTGGAAGGGAGGGAAGAAGGGAGGAAAGGGCAGCTG GTGATTGACGCCGAGATATTCGAGGTGACACCAGCGTTTCACGTGGTGGAGGTAAAGAAAGCGGCGGGGGATACATTGGAGTACGTAGAGTTTTGTAACG AGGGGTTGAGACCGTCGTTGAAGGATATTGTTTGGGCTTGGCAAGGGAACGTAGTAGAGCAGCCGGCATAG
AA sequence Show only first row Show all	>Lus10007283 pacid=23142465 polypeptide=Lus10007283 locus=Lus10007283.g ID=Lus10007283.BGIv1.0 annot-version=v1.0 MEKKKPGAILMSKYELGKLLGKGNFAKVYHARNLLTGQNVAVKVIDKSKIPAGMTDQIKREISVMSLVRHPNVVHLFEVMASRSKIYFVMELARGGELFN RIIAAKGRLKEETARKYFQQLIAAVEFCHSRGVYHRDLKPENLLLDEQGNLKVSDFGLSAIRDDSTRNGNDGLLHTTCGTPAYVAPEVVMRRGYDGAKTD VWSCGVVLFVLLAGYLPFHDANLMEMYRKIARGKFKCPNWFNPEARKLVSKILDPSPARRITIASIMTNSWFLKGFKKIETPRSPQGDDRRNMLRDVETA FDGNIKDDGDSPTSVLRPAFYNAFDIIALSRGFDLSGLFDNGGRIKERESRFMTRRTAEEIVNKFEEIAANGGFEARREEGGGTTAVKLEGREEGRKGQL VIDAEIFEVTPAFHVVEVKKAAGDTLEYVEFCNEGLRPSLKDIVWAWQGNVVEQPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45820		PKS18, CIPK20, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10007283 [exp]	0	1
					Lus10037199 [exp]	1.4	0.8411
					Lus10015249 [exp]	3.5	0.7873
AT1G63740			Disease resistance protein (TI...		Lus10010546 [exp]	4.0	0.8134
AT3G19300			Protein kinase superfamily pro...		Lus10034770 [exp]	11.2	0.7295
AT1G78580		ATTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE...		Lus10005412 [exp]	11.2	0.7867
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10004347 [exp]	12.1	0.7762
AT5G03310			SAUR-like auxin-responsive pro...		Lus10037990 [exp]	21.9	0.7789
AT5G44390			FAD-binding Berberine family p...		Lus10026775 [exp]	25.2	0.7893
AT1G23540		IGI1, AtPERK12	proline-rich extensin-like rec...		Lus10013014 [exp]	26.9	0.7177
AT3G21260		GLTP3	GLYCOLIPID TRANSFER PROTEIN 3,...		Lus10018917 [exp]	33.5	0.7073

Compare expression of checked genes

Lus10007283 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.