Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18700 653 / 0 ATWL4, CIPK12, SnRK3.9 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) AT5G45810 596 / 0 CIPK19, SnRK3.5 SNF1-RELATED PROTEIN KINASE 3.5, CBL-interacting protein kinase 19 (.1) AT1G29230 587 / 0 ATCIPK18, ATWL1, CIPK18, SnRK3.20 SNF1-RELATED PROTEIN KINASE 3.20, WPL4-LIKE 1, CBL-interacting protein kinase 18 (.1) AT2G34180 546 / 0 ATWL2, CIPK13, SnRK3.7 SNF1-RELATED PROTEIN KINASE 3.7, WPL4-LIKE 2, CBL-interacting protein kinase 13 (.1) AT5G58380 415 / 2e-142 PKS2, CIPK10, SnRK3.8, SIP1 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) AT4G30960 412 / 9e-142 CIPK6, SIP3, SnRK3.14, ATCIPK6 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) AT5G45820 411 / 2e-141 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) AT1G30270 410 / 1e-140 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT1G01140 391 / 3e-133 PKS6, CIPK9, SnRK3.12 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) AT5G07070 391 / 3e-133 CIPK2, SnRK3.2 SNF1-RELATED PROTEIN KINASE 3.2, CBL-interacting protein kinase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015275 [exp] 680 / 0 AT4G18700 736 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Lus10021852 [exp] 434 / 2e-150 AT4G30960 658 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10029232 [exp] 426 / 6e-150 AT4G18700 466 / 3e-165 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Lus10036280 [exp] 427 / 9e-148 AT4G30960 662 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10007283 [exp] 421 / 8e-145 AT5G45820 578 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Lus10022749 [exp] 413 / 5e-142 AT5G58380 598 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10008582 [exp] 404 / 4e-139 AT5G58380 570 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10042229 [exp] 404 / 3e-138 AT5G58380 676 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10014163 [exp] 402 / 2e-137 AT5G58380 592 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G067600 [exp] 639 / 0 AT4G18700 720 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Potri.004G058300 [exp] 631 / 0 AT4G18700 735 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Potri.011G067500 [exp] 443 / 7e-154 AT5G45820 647 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Potri.016G133500 [exp] 435 / 3e-150 AT5G58380 593 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.006G186200 [exp] 429 / 1e-148 AT4G30960 649 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.019G048800 [exp] 424 / 2e-146 AT5G58380 539 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.013G156000 [exp] 423 / 5e-146 AT5G58380 623 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.019G127500 [exp] 422 / 1e-145 AT5G58380 641 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.018G108500 [exp] 421 / 2e-145 AT4G30960 639 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.013G155600 [exp] 402 / 3e-138 AT2G30360 536 / 0.0 SNF1-RELATED PROTEIN KINASE 3.22, PROTEIN KINASE SOS2-LIKE 5, CBL-INTERACTING PROTEIN KINASE 11, SOS3-interacting protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0573 [flax] [poplar] KA1-like PF03822 [flax] [poplar] NAF NAF domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10007284 pacid=23142449 polypeptide=Lus10007284 locus=Lus10007284.g ID=Lus10007284.BGIv1.0 annot-version=v1.0 ATGAAAGGCGGCCTGATCGCCCACATCAAGCGCGAGATCTCGAACCTCCGCCGCGTCCGCCACCCGAACATCGTTCACCTCTTCGAGGTTATGGCCACCA AGGCGAAGATCTACTTCGTCATGGAGTATGTTCGCGGCGGCGAGCTCTTCAACAAGGTAGCCAAGGGCCGATTAAAGGAGGACGTCGCCCGGAGGTACTT CCAGCAATTGATGTCCGCCGTCGCCTTTTGCCACGCCAGAGGAGTCTTCCACCGCGATCTCAAGCCGGAGAATCTGCTTTTGGATGAGGAAGGAAACCTA AAGGTCTCTGATTTCGGACTCAGCGCCGTCGCTGATCAGATCCGGCAGGACGGGCTGTTCCACACGTTTTGTGGAACTCCGGCGTATGTAGCACCGGAGG TTCTCGGGAGGAAAGGATACGACGCTGCTAAGGTAGATATTTGGTCTTGTGGAGTTATCCTGTTTGTTTTGATGGCTGGATATTTACCTTTCCATGATCA GAACATTATGATGATGTATAAGAAGATTTACAAAGGGGAATTTCGTTGCCCTAGGTGGTTCTCCCCTGAATTAGCTAAGCTATTGACTAAATTACTCGAT ACGAATCCGGCCACTAGGATTACGATTGCTGAGGTTATGCAGAATCGATGGTTCAAGAGAGGGTTTAAGCACATCAAATTCTACATAGAGGATGATAGGG TTTACAATGTAGTAGACGAATTGAATCAGGTGGATCAGCACGACGATTCTGCCTCCGATACATCAATGTCCGAGTCTGATACCGAAATGGAAGCTAGAAG ACGTCTTACTTCCTTACCTAGACCGGCTAGCTTGAACGCATTTGACATCATATCGTTCTCGCCAGGCTTCGATCTGTCAGGGCTGTTCGAGGAAGGCGGA GAAGGTTCGAGATTTGTCTCGGGGGCGCCTGTGACGAAGATCATCTCGAAGCTGGAGGAGATTGCTAAGCTGGTGAGCTTTACAGTGAGGAAGAAGGATT ACAGGGTGAGCTTGGAAGGGAGCAGGGAAGGTATTAAAGGGCCATTGACGATTGCTGCCGAGATTTTCGAGCTTACACCGAAGTTGGTGGTCGTGGAAGT TAAGAAGAAAGCTGGGGATAAAGGGGAGTATGAGGATTTCTGCAACAAGGAGCTGAGACCAGGGTTGCAGAAGCTGAACATGGATCAGGAATTCGAAGAT GCTTCTGCTGCTTCTTCCACTGTCGGTAATTCGCCACGATTGTCGACTGAGTCTTTGCCCTCGTTTTCGTCTGCGTATATACCTTCTGATACTGAATAA
AA sequence Show only first row Show all	>Lus10007284 pacid=23142449 polypeptide=Lus10007284 locus=Lus10007284.g ID=Lus10007284.BGIv1.0 annot-version=v1.0 MKGGLIAHIKREISNLRRVRHPNIVHLFEVMATKAKIYFVMEYVRGGELFNKVAKGRLKEDVARRYFQQLMSAVAFCHARGVFHRDLKPENLLLDEEGNL KVSDFGLSAVADQIRQDGLFHTFCGTPAYVAPEVLGRKGYDAAKVDIWSCGVILFVLMAGYLPFHDQNIMMMYKKIYKGEFRCPRWFSPELAKLLTKLLD TNPATRITIAEVMQNRWFKRGFKHIKFYIEDDRVYNVVDELNQVDQHDDSASDTSMSESDTEMEARRRLTSLPRPASLNAFDIISFSPGFDLSGLFEEGG EGSRFVSGAPVTKIISKLEEIAKLVSFTVRKKDYRVSLEGSREGIKGPLTIAAEIFELTPKLVVVEVKKKAGDKGEYEDFCNKELRPGLQKLNMDQEFED ASAASSTVGNSPRLSTESLPSFSSAYIPSDTE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10007284 [exp]	0	1
AT3G22750			Protein kinase superfamily pro...		Lus10022076 [exp]	2.0	0.8831
AT1G55910		ZIP11	zinc transporter 11 precursor ...		Lus10016609 [exp]	2.2	0.8918
AT5G42660			Protein of unknown function (D...		Lus10032311 [exp]	3.2	0.8739
AT1G01430		TBL25	TRICHOME BIREFRINGENCE-LIKE 25...		Lus10029454 [exp]	5.9	0.8664
AT5G58000			Reticulon family protein (.1)		Lus10035829 [exp]	7.5	0.8780
AT4G16380			Heavy metal transport/detoxifi...		Lus10039073 [exp]	10.2	0.8545
AT4G33440			Pectin lyase-like superfamily ...		Lus10014799 [exp]	11.0	0.8572
AT1G09960		ATSUC4, SUC4, A...	sucrose transporter 4 (.1)		Lus10032815 [exp]	11.4	0.8464
AT4G13010			Oxidoreductase, zinc-binding d...		Lus10003159 [exp]	14.1	0.8487
AT1G70230		AXY4, TBL27	ALTERED XYLOGLUCAN 4, TRICHOME...		Lus10029188 [exp]	15.1	0.8402

Compare expression of checked genes

Lus10007284 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.