Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45800 601 / 0 MEE62 maternal effect embryo arrest 62, Leucine-rich repeat protein kinase family protein (.1) AT2G24230 300 / 2e-90 Leucine-rich repeat protein kinase family protein (.1) AT5G58150 240 / 5e-69 Leucine-rich repeat protein kinase family protein (.1) AT1G55610 179 / 8e-47 BRL1 BRI1 like (.1.2) AT5G07280 175 / 2e-45 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT3G13380 171 / 3e-44 BRL3 BRI1-like 3 (.1) AT4G39400 166 / 1e-42 DWF2, CBB2, BIN1, BRI1, ATBRI1 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) AT1G62950 153 / 1e-38 leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G66830 148 / 2e-37 Leucine-rich repeat protein kinase family protein (.1) AT3G56100 148 / 3e-37 IMK3, MRLK meristematic receptor-like kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029235 [exp] 1065 / 0 AT5G45800 668 / 0.0 maternal effect embryo arrest 62, Leucine-rich repeat protein kinase family protein (.1) Lus10036608 [exp] 345 / 3e-107 AT2G24230 1134 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035826 [exp] 334 / 2e-103 AT2G24230 1081 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033533 [exp] 167 / 6e-43 AT4G39400 1492 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10020835 [exp] 163 / 2e-41 AT4G39400 1486 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10022679 [exp] 160 / 5e-41 AT3G51740 926 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10006675 [exp] 152 / 3e-38 AT1G12460 984 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10014996 [exp] 147 / 1e-36 AT5G07280 1264 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10006817 [exp] 141 / 2e-34 AT4G39400 1356 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G067900 [exp] 744 / 0 AT5G45800 731 / 0.0 maternal effect embryo arrest 62, Leucine-rich repeat protein kinase family protein (.1) Potri.004G058500 [exp] 738 / 0 AT5G45800 709 / 0.0 maternal effect embryo arrest 62, Leucine-rich repeat protein kinase family protein (.1) Potri.006G185100 [exp] 325 / 6e-100 AT2G24230 1159 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G107400 [exp] 297 / 3e-89 AT2G24230 1153 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G169600 [exp] 178 / 1e-46 AT1G55610 1500 / 0.0 BRI1 like (.1.2) Potri.001G472900 [exp] 174 / 4e-45 AT1G55610 1485 / 0.0 BRI1 like (.1.2) Potri.015G141200 [exp] 168 / 4e-43 AT5G07280 1347 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G161000 [exp] 160 / 1e-40 AT1G72300 1199 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.012G139000 [exp] 159 / 3e-40 AT5G07280 1377 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.003G074000 [exp] 155 / 3e-39 AT1G72300 1215 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10007287 pacid=23142453 polypeptide=Lus10007287 locus=Lus10007287.g ID=Lus10007287.BGIv1.0 annot-version=v1.0 ATGAAACCCTTCTGCATATTAGCTCTTCTCCTCTCCATAACCACACTAGCCCAACCATCATCATCAACATGCACCAACTCCACAGACCACCACCTCCTCT CCAAGGCCTTCACCTCCGTCGCCAATTTCAACCTCTCCTTATTCTTCTCAAACTGCTCCTCCACCATCACAGAAATCAACCTCCCTTCCAAAAACCTCTC CGGCACCGTTTCATGGCACCACCTCCAAAACCTCTCCCACCTCCACGTCATCGACCTCTCCGGTAACTCCCTCCACGGCCACCTCCCTTCCTGGCTCTGG TCCCACAACAACCTCTCCGTCCTCAACCTCGCCCATAACCACCTCGGCGGCCCCGTCGGAAACGACAACACTTCCTCGTCGTTTCGTCCTTCTTCAATCA GAGTGCTGAACATTTCCGGTAACAGATTCACCAACAACTCCGTCAAGCTCTCCACTTTCCCCAATCTCGAAATCCTCGACCTTTCGTTCAACTATCTCGG TCGTTTCCCTTCTGGGTTGGATAAATTGACAAAGCTACAGAGTCTCAACATCTCCGGATGTAGAATCCCTGGCAATATCAAGTCAATTTCTCAGTTTCAG TCGTTGAAACACCTCGACATCTCGAATAACGTATTAACCGGAGCTTTCCCTTCCGATTTTCCTCCTTTGACCAAAGTCAACTCCCTCAACATTTCATTCA ACAACTTCACCGGCCTCGTCAGCTCCGACGAGTATCGAAAATTCGGGAAGTCGTCCTTCATCCATGCCGGCAGCAACCTAGTCTTCAATTCGAAATCAAA GCCGAAATCAAAACCGAAATCAAAACCGAAATCAGCTCCCATTGTTGCGGTTTCGAAATCTCGCCACTACAGTCACCGAGTTGTGATCATCGCCGTGTCA TCGGCGTCGGCGTTTCTGATTCTGATATCGGCGGCGGTCTGCTTGTTGCTCTGCGCCGTACGGCGCAGAGCAACAACGAACCGGAAGAGGAAATGGGCGA TATCGAAACCAGTTCAGTTTCCCTACAAGATGGAGAAATCGGGACCGTTCAGTTTCGAAACCGAATCGGGTACGTCATGGGTGGCGGACATCCGGGAGCC CACGTCGGCGGCCGTGGTGATGTGTGCGAAGCCGTTGATGAACTTGACGTTCATGGACCTGATCGCCGCCACGTCACACTTCGGGAAGGACTCTCTGTTG GCGGAAGGGAGGTGTGGGCCCATGTACCGAGCTGTCCTGCCAGGGGACGTACACGTGGCGATTAAGGTGTTAGAGAACGCGCGGGACATGGGTCGTGATG AAGCTGTGGGGATGTTTGAAAATTTGTCAAAGCTCAAGCACCCTAATCTCTTGCCCCTCTGTGGCTACTGCATTGCAGGGAGTGAGAAGCTGGTGCTCTA CGAGTTCATGTCCAACGGGGATCTCCACCGATGGCTGCACGAGCTCCCCACCCTCGAACCCAACGTCGAGGATTGGACCACCGACACGTGGCAGGATCGC GACATGCAAGCCCCCGGCCTTCACGTGTCGTCGTCCTCTTACTCCTCTCCAGAGGAGGAAGACAAGAGGAACTGGTTGATCCGTCACCGGATTGCTGTCG GGGTGGCGCGCGGGCTTGCTTATCTCCACCACACGGGTTCCGCTCATGGCCACTTGGTCTCGTCGAACGTGTTGTTGTCTGATTCGCTTGAGCCTCGTGT GGCGGATTTCGGGTTGAGGAGTTTGGGGCCGGGTAATCATAAACCGGTTGGGGTTGAGGATGATGTGTATTGTTTTGGGGCGGTGTTGATCGAGTTGATG ACTCGGAAGCCCGGGAGCGAGGAGATCGTGCGGTGGGTGAGGAAGTTGGTGAGGGAAGGGCGTGGGGTGGATGCGCTCGACTCGAGGTTGGTGCGAGGTG GCGAGTTTTTGAATGGGATGGTCGAGTGCTTGCGGGTCGGGTACCTATGTACGGCGGAGTCGCCCGAGAAGAGGCCGACCATGCAACAGGTTGTGGGGTT GCTCAAGGACCTACACCCCGAGTTTGACTCGTGA
AA sequence Show only first row Show all	>Lus10007287 pacid=23142453 polypeptide=Lus10007287 locus=Lus10007287.g ID=Lus10007287.BGIv1.0 annot-version=v1.0 MKPFCILALLLSITTLAQPSSSTCTNSTDHHLLSKAFTSVANFNLSLFFSNCSSTITEINLPSKNLSGTVSWHHLQNLSHLHVIDLSGNSLHGHLPSWLW SHNNLSVLNLAHNHLGGPVGNDNTSSSFRPSSIRVLNISGNRFTNNSVKLSTFPNLEILDLSFNYLGRFPSGLDKLTKLQSLNISGCRIPGNIKSISQFQ SLKHLDISNNVLTGAFPSDFPPLTKVNSLNISFNNFTGLVSSDEYRKFGKSSFIHAGSNLVFNSKSKPKSKPKSKPKSAPIVAVSKSRHYSHRVVIIAVS SASAFLILISAAVCLLLCAVRRRATTNRKRKWAISKPVQFPYKMEKSGPFSFETESGTSWVADIREPTSAAVVMCAKPLMNLTFMDLIAATSHFGKDSLL AEGRCGPMYRAVLPGDVHVAIKVLENARDMGRDEAVGMFENLSKLKHPNLLPLCGYCIAGSEKLVLYEFMSNGDLHRWLHELPTLEPNVEDWTTDTWQDR DMQAPGLHVSSSSYSSPEEEDKRNWLIRHRIAVGVARGLAYLHHTGSAHGHLVSSNVLLSDSLEPRVADFGLRSLGPGNHKPVGVEDDVYCFGAVLIELM TRKPGSEEIVRWVRKLVREGRGVDALDSRLVRGGEFLNGMVECLRVGYLCTAESPEKRPTMQQVVGLLKDLHPEFDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45800		MEE62	maternal effect embryo arrest ...		Lus10007287 [exp]	0	1
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10026328 [exp]	1.4	0.8303
AT3G48120			unknown protein		Lus10042150 [exp]	2.2	0.7519
AT1G77920	bZIP		bZIP transcription factor fami...		Lus10009055 [exp]	3.0	0.7371
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10026329 [exp]	4.0	0.8078
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10037150 [exp]	4.5	0.7355
AT2G38510			MATE efflux family protein (.1...		Lus10025237 [exp]	4.9	0.7619
AT1G29220			transcriptional regulator fami...		Lus10007288 [exp]	6.9	0.6541
AT4G11610		NTRB, ATNTRB	C2 calcium/lipid-binding plant...		Lus10000605 [exp]	7.9	0.7467
AT3G53810			Concanavalin A-like lectin pro...		Lus10001562 [exp]	9.6	0.6898
AT1G44750		ATPUP11	purine permease 11 (.1.2.3)		Lus10019503 [exp]	11.0	0.6947

Compare expression of checked genes

Lus10007287 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.