Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29220 150 / 7e-42 transcriptional regulator family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029236 [exp] 355 / 1e-122 AT1G29220 154 / 8e-45 transcriptional regulator family protein (.1.2) Lus10029237 [exp] 154 / 1e-45 AT1G29220 117 / 4e-32 transcriptional regulator family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G068100 [exp] 221 / 1e-68 AT1G29220 262 / 1e-84 transcriptional regulator family protein (.1.2) Potri.004G058700 [exp] 177 / 1e-51 AT1G29220 197 / 1e-59 transcriptional regulator family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007288 pacid=23142460 polypeptide=Lus10007288 locus=Lus10007288.g ID=Lus10007288.BGIv1.0 annot-version=v1.0 ATGGCCTCGCGGAAGAAACAGTCGGAAGGGATCGCTCTGCTCTCGATGTACAGCGACGAAGACGACGAGGAGATGGAGGAGCTTGGAGAGGGAGACGCGG AGGTGCAACGGCGGGAACAGGAGCAGCAACCGGAAGGTAGCGGCGGTGATAATCCGGAATCGAACCATATGGAAGAAGACTCGACGAACGACGCCATGGT TACGGACGAGTGCGGTGGTGGAGGTGAGCAGACCGACGTGGCGCGGCAGCTGCAGCGGGTTGAAGTGTCGTTCACTTCGTCCTCGACATCCCTGAGGGCT GGAAGAGTTGTTAGTTCGAAGAAGAGCGTCAGAGGGAGTGTGACGATTGTGGATTATGGGCATGATGAAGTTGCTATGTCTCCTGAACCAGAAGATGCAA TCCCAGAACATACGTCTCCAGGAACTAGTCAGGCCATTGTAACTCCCCAACCAACTGATCATACTGAACAAGCACAGTCGGATTATGTAAATAATAGCAT TTCTGAATCAGAAGATGTGAAGGTGGAGGAGCCAACTGGTCCTCCTGAGGGGAAGACTGATCTACTGGATAAATTCTTACCCCCTCCACCAGAAGAGAAG TGCTCACTAGAATTGCAAAAAGTAGGTAGAAGCTTCAATGCAGAAGTCCGCAATAGGAAGGATTATCGGAACCCTGATTTCTTACAGCATGCAGTGAATT ATCAGGAGGCTGATTTGCGGCGAGACAGGGAAAGGAGGGAGCAAGAATTGAAAAGAAGCCCTAAGGTAGAGTTTGTTCCAGGTGGAACTCAACCTGGAAT GGTGGTGCCTCAATCAAAATTCAGCATGCCTATACCAGTTGCTGCTAGTGGATTGCCACCGGCACCCGTTCCTGCCGAAACTGGTTCACGAGACGGTAGG CAGAACAAGAAGTCAAAATGGGACAAGGTAGATGGTGATGGTAGGAATCCTCTCCCGGCCGGCAGTCAAGATTCCTTAGCAACCGCAGCAGCCACTCATG CTGCGCTTCTCTCCGCTACTAACGCTGGTTCCGGATATCCAGCTTTCGTGCAGCAGAAACGACGGGAGGCGGAAGAGAGAAGATCTGGCGAGCGAAGGAC TGACAGAAGATCTTGA
AA sequence Show only first row Show all	>Lus10007288 pacid=23142460 polypeptide=Lus10007288 locus=Lus10007288.g ID=Lus10007288.BGIv1.0 annot-version=v1.0 MASRKKQSEGIALLSMYSDEDDEEMEELGEGDAEVQRREQEQQPEGSGGDNPESNHMEEDSTNDAMVTDECGGGGEQTDVARQLQRVEVSFTSSSTSLRA GRVVSSKKSVRGSVTIVDYGHDEVAMSPEPEDAIPEHTSPGTSQAIVTPQPTDHTEQAQSDYVNNSISESEDVKVEEPTGPPEGKTDLLDKFLPPPPEEK CSLELQKVGRSFNAEVRNRKDYRNPDFLQHAVNYQEADLRRDRERREQELKRSPKVEFVPGGTQPGMVVPQSKFSMPIPVAASGLPPAPVPAETGSRDGR QNKKSKWDKVDGDGRNPLPAGSQDSLATAAATHAALLSATNAGSGYPAFVQQKRREAEERRSGERRTDRRS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29220			transcriptional regulator fami...		Lus10007288 [exp]	0	1
AT5G45800		MEE62	maternal effect embryo arrest ...		Lus10007287 [exp]	6.9	0.6541
AT1G44750		ATPUP11	purine permease 11 (.1.2.3)		Lus10019503 [exp]	11.7	0.6211
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Lus10009053 [exp]	18.5	0.6288
AT2G32710		ICK7, ACK2, KRP...	KIP-RELATED PROTEIN 4, INTERAC...		Lus10032611 [exp]	20.3	0.6222
					Lus10009611 [exp]	22.0	0.6023
AT3G14880			unknown protein		Lus10026217 [exp]	24.5	0.6118
AT3G48120			unknown protein		Lus10042150 [exp]	25.6	0.6139
AT3G13225			WW domain-containing protein (...		Lus10010579 [exp]	27.9	0.6160
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10028546 [exp]	45.6	0.5966
AT5G16380			Protein of unknown function, D...		Lus10026841 [exp]	53.3	0.5696

Compare expression of checked genes

Lus10007288 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.