Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29200 699 / 0 O-fucosyltransferase family protein (.1.2.3) AT1G62330 545 / 0 O-fucosyltransferase family protein (.1) AT1G11990 511 / 1e-175 O-fucosyltransferase family protein (.1) AT2G01480 310 / 9e-98 O-fucosyltransferase family protein (.1) AT5G65470 300 / 6e-95 O-fucosyltransferase family protein (.1) AT1G14970 300 / 5e-94 O-fucosyltransferase family protein (.1) AT3G26370 288 / 7e-90 O-fucosyltransferase family protein (.1) AT1G35510 283 / 2e-87 O-fucosyltransferase family protein (.1) AT4G38390 277 / 2e-85 RHS17 root hair specific 17 (.1) AT1G38131 278 / 3e-85 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029239 [exp] 1167 / 0 AT1G29200 698 / 0.0 O-fucosyltransferase family protein (.1.2.3) Lus10015558 [exp] 510 / 4e-175 AT1G62330 733 / 0.0 O-fucosyltransferase family protein (.1) Lus10013460 [exp] 308 / 3e-97 AT2G01480 868 / 0.0 O-fucosyltransferase family protein (.1) Lus10003715 [exp] 308 / 4e-97 AT2G01480 897 / 0.0 O-fucosyltransferase family protein (.1) Lus10002653 [exp] 300 / 1e-94 AT5G65470 760 / 0.0 O-fucosyltransferase family protein (.1) Lus10012732 [exp] 298 / 4e-94 AT5G65470 765 / 0.0 O-fucosyltransferase family protein (.1) Lus10034606 [exp] 297 / 7e-93 AT2G01480 848 / 0.0 O-fucosyltransferase family protein (.1) Lus10009276 [exp] 290 / 9e-91 AT4G24530 801 / 0.0 O-fucosyltransferase family protein (.1) Lus10021790 [exp] 289 / 3e-90 AT2G01480 838 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G068300 [exp] 834 / 0 AT1G29200 737 / 0.0 O-fucosyltransferase family protein (.1.2.3) Potri.004G058900 [exp] 823 / 0 AT1G29200 687 / 0.0 O-fucosyltransferase family protein (.1.2.3) Potri.011G010600 [exp] 560 / 0 AT1G62330 714 / 0.0 O-fucosyltransferase family protein (.1) Potri.004G005100 [exp] 555 / 0 AT1G62330 709 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G130600 [exp] 301 / 3e-94 AT2G01480 912 / 0.0 O-fucosyltransferase family protein (.1) Potri.007G011000 [exp] 298 / 3e-94 AT5G65470 784 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G111500 [exp] 298 / 4e-93 AT2G01480 906 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G087300 [exp] 293 / 7e-91 AT1G38131 704 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G185200 [exp] 287 / 2e-89 AT3G26370 905 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G048500 [exp] 285 / 1e-88 AT3G26370 893 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10007290 pacid=23142491 polypeptide=Lus10007290 locus=Lus10007290.g ID=Lus10007290.BGIv1.0 annot-version=v1.0 ATGAAGGATTATCAGACGAGAAGTTCCGAAGGGTTTGCAGGAAATGATCCTTCTTTAGGTAGGAGGTTGTCTGGTAAGGGTTTGAGAAATGATGAACAGC TGGGGAAGAGTAGTTCTGTTAAGGGATCAGCTTATGTTGGGAAAAGGAATTCCTTGTTCAGCAAGCATGTCAAGTCCATTGCCAAGATGCTTGCTTTTGT TGGGTTGCTTTTCATGATTGATTCCTTCTTGGTGTCTGTTTTCGATTCGTTAAGGACTCAACATAATTCGAAATCGGATCATGAGGACCATGCTGCTTAC CCTGTCGAAGCAAACCGACCGGTTCGAATGTATGGTCGACTTGTAAACATGGCCTCGAATGCACTTGCAGAGAAAGAGTTTGAGCAAGATACAAGATTCT GGAGGGAACTGCATTCAAAGAAAGCACTCGAATGGAAACCTTGTGCGGATCGAAAAGTTTCGAACAAACCAGGAAGAGTTGCGAAAAGTAACGGTTACAT AATGGTGAGTGCAAATGGTGGTCTCAACCAACAAAGAGTTGCTATTTGCAATGCTGTTGCAGTGGCTTCTTTACTCAACGCTACCCTAGTTCTTCCCACA TTTCTCTACAGCAATGTCTGGAAGGACCCGAGCCAGTTTGGTGATATCTACCAGGAGAAACATTTCTTCGATATGATGGAAGACGAAATCGATATAGTGA AAGAACTTCCGGATCGTTTCAAGTCTATAGACATTGAAGCAATTGGCAGTCTGATTACTGATTCTGACATGCCAAAAGAAGCTACTCCTGGAGATTATCA TGAGAAGGTGCTTCCGGTTCTGCTTCGAAATGGAGTTGTTCACTTGCTCGGTTATGGAAACCGGCTTGGCTTTGATCCATTGCCATCTGAAATCCAGAAA TTAAGGTGCAAATGTAACTTCCACGCGTTGAAGTTTGTTCCGAAAATCCAAGAAGTTGGCTCGTTGTTGATCCAAAGGATAAGAAGATACGAAGCTACAC CCAGTACGTTGCACAAACAACTGCTTGGAGAATACGCGTCCAACGTTCCCTCAAATCCGCAAGATGGAACGAGACGGCCATTGAAGTATCTGGCTCTTCA CTTGAGGTTCGAGATCGATATGATAGCCTACTCTCTGTGCGACTTTGGAGGTGGACCGGTTGAGAAACGGGAACTTCAGGCTTATAGAGAGAGCCATTTC CCTCTTCTCATCGAACGCTTGAGAAAATCGAAACCGATATCGACAGAAGAGATGAGAAAGACGGGTAAATGCCCCTTGACACCAGAGGAAGCCGGACTAG TCCTTGCTGGCCTAGGATTCAAGAGAGGGACTCATATCTACCTTGCTGGGTCCCAAGTCTACGGAGGAAGCTCAAGAATGCAGCCATTTGTTAGCCTTTA CCCTAACTTGCTCACCAAAGAAACTCTCCTCACACCTGCTGAACTTGAACCTTTCAGGAATTTCTCTTCACAGGTAATCTCCCATTACCCTAAATTGCTC ACCAAGCTGGCTGCATTAGACTTGATCGCATGTACGAGTGCAGACGTGTTTGCCATGACCGATTCAGGAAGCCAATTGGCGTCATTAGTGTCAGGGTTCA GGACTTACTACGGGGGTGGGAACGCTCCAACCCTACGGCCAAACAAGAAGAGACTAGCTGCAATTTTGTATGAGAACAACACGATACCATGGAGAGGTTT CGAAGAGAGAGCGAGGCGTATGATCGAAGAAGGCCAAAGGGCAAGAACTAGGCGATATGGTCGAAGCATTTATCGACAGCCTCGATGTCCAGAGTGCATG TGTAGTAGTAGTAGCAGTATTTCTCACTAG
AA sequence Show only first row Show all	>Lus10007290 pacid=23142491 polypeptide=Lus10007290 locus=Lus10007290.g ID=Lus10007290.BGIv1.0 annot-version=v1.0 MKDYQTRSSEGFAGNDPSLGRRLSGKGLRNDEQLGKSSSVKGSAYVGKRNSLFSKHVKSIAKMLAFVGLLFMIDSFLVSVFDSLRTQHNSKSDHEDHAAY PVEANRPVRMYGRLVNMASNALAEKEFEQDTRFWRELHSKKALEWKPCADRKVSNKPGRVAKSNGYIMVSANGGLNQQRVAICNAVAVASLLNATLVLPT FLYSNVWKDPSQFGDIYQEKHFFDMMEDEIDIVKELPDRFKSIDIEAIGSLITDSDMPKEATPGDYHEKVLPVLLRNGVVHLLGYGNRLGFDPLPSEIQK LRCKCNFHALKFVPKIQEVGSLLIQRIRRYEATPSTLHKQLLGEYASNVPSNPQDGTRRPLKYLALHLRFEIDMIAYSLCDFGGGPVEKRELQAYRESHF PLLIERLRKSKPISTEEMRKTGKCPLTPEEAGLVLAGLGFKRGTHIYLAGSQVYGGSSRMQPFVSLYPNLLTKETLLTPAELEPFRNFSSQVISHYPKLL TKLAALDLIACTSADVFAMTDSGSQLASLVSGFRTYYGGGNAPTLRPNKKRLAAILYENNTIPWRGFEERARRMIEEGQRARTRRYGRSIYRQPRCPECM CSSSSSISH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29200			O-fucosyltransferase family pr...		Lus10007290 [exp]	0	1
AT1G29200			O-fucosyltransferase family pr...		Lus10029239 [exp]	1.0	0.9776
AT1G02030	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10021637 [exp]	1.7	0.9339
AT3G59110			Protein kinase superfamily pro...		Lus10001055 [exp]	2.0	0.9371
AT2G33990		IQD9	IQ-domain 9 (.1)		Lus10015300 [exp]	2.4	0.9287
AT5G27000		KATD, ATK4	KINESIN-LIKE PROTEIN IN ARABID...		Lus10015212 [exp]	5.0	0.9321
AT4G14760			kinase interacting (KIP1-like)...		Lus10041192 [exp]	5.2	0.9176
AT5G39785			Protein of unknown function (D...		Lus10036751 [exp]	5.5	0.9174
AT3G48770			DNA binding;ATP binding (.1)		Lus10004567 [exp]	5.7	0.9140
AT2G27950			Ring/U-Box superfamily protein...		Lus10021403 [exp]	7.2	0.9019
AT1G79820		SGB1	SUPPRESSOR OF G PROTEIN BETA1,...		Lus10035862 [exp]	7.7	0.9119

Compare expression of checked genes

Lus10007290 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.