Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18710 709 / 0 DWF12, UCU1, BIN2, ATSK21 ULTRACURVATA 1, DWARF 12, BRASSINOSTEROID-INSENSITIVE 2, SHAGGY-LIKE KINASE 21, Protein kinase superfamily protein (.1.2) AT2G30980 694 / 0 ASKdZeta, ATSK23, BIL1, ATSK2-2 BIN2-LIKE 1, SHAGGY-LIKE PROTEIN KINASE 23, A. THALIANA SHAGGY-LIKE KINASE GROUP 2 2, SHAGGY-related protein kinase dZeta (.1) AT1G06390 690 / 0 ATGSK1, GSK1, ATSK22, BIL2, ATSK2-3 BIN2-LIKE 2, SHAGGY-LIKE PROTEIN KINASE 22, A. THALIANA SHAGGY-LIKE KINASE GROUP 2 3, GSK3/SHAGGY-like protein kinase 1 (.1.2) AT5G14640 635 / 0 ATSK13 shaggy-like kinase 13 (.1) AT3G05840 625 / 0 ATSK12 Protein kinase superfamily protein (.1.2) AT5G26751 620 / 0 ATSK11 ,SK 11 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) AT4G00720 598 / 0 ASKTHETA, ATSK32 SHAGGY-LIKE PROTEIN KINASE THETA, shaggy-like protein kinase 32 (.1) AT1G09840 578 / 0 AtHIR1, ATSK41 hypersensitive induced reaction 1, shaggy-like protein kinase 41 (.1.2.3.4.5.6) AT1G57870 577 / 0 ATSK42 shaggy-like kinase 42 (.1.2.3) AT3G61160 541 / 0 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029240 [exp] 790 / 0 AT4G18710 708 / 0.0 ULTRACURVATA 1, DWARF 12, BRASSINOSTEROID-INSENSITIVE 2, SHAGGY-LIKE KINASE 21, Protein kinase superfamily protein (.1.2) Lus10025395 [exp] 763 / 0 AT4G18710 706 / 0.0 ULTRACURVATA 1, DWARF 12, BRASSINOSTEROID-INSENSITIVE 2, SHAGGY-LIKE KINASE 21, Protein kinase superfamily protein (.1.2) Lus10015274 [exp] 736 / 0 AT4G18710 688 / 0.0 ULTRACURVATA 1, DWARF 12, BRASSINOSTEROID-INSENSITIVE 2, SHAGGY-LIKE KINASE 21, Protein kinase superfamily protein (.1.2) Lus10001519 [exp] 625 / 0 AT5G26751 790 / 0.0 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) Lus10031440 [exp] 625 / 0 AT5G26751 790 / 0.0 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) Lus10013088 [exp] 615 / 0 AT5G14640 741 / 0.0 shaggy-like kinase 13 (.1) Lus10022254 [exp] 608 / 0 AT5G14640 738 / 0.0 shaggy-like kinase 13 (.1) Lus10018850 [exp] 589 / 0 AT4G00720 747 / 0.0 SHAGGY-LIKE PROTEIN KINASE THETA, shaggy-like protein kinase 32 (.1) Lus10041360 [exp] 587 / 0 AT4G00720 731 / 0.0 SHAGGY-LIKE PROTEIN KINASE THETA, shaggy-like protein kinase 32 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G059000 [exp] 738 / 0 AT4G18710 728 / 0.0 ULTRACURVATA 1, DWARF 12, BRASSINOSTEROID-INSENSITIVE 2, SHAGGY-LIKE KINASE 21, Protein kinase superfamily protein (.1.2) Potri.011G068600 [exp] 737 / 0 AT4G18710 723 / 0.0 ULTRACURVATA 1, DWARF 12, BRASSINOSTEROID-INSENSITIVE 2, SHAGGY-LIKE KINASE 21, Protein kinase superfamily protein (.1.2) Potri.005G005400 [exp] 625 / 0 AT5G26751 789 / 0.0 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) Potri.002G190500 [exp] 624 / 0 AT5G26751 781 / 0.0 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) Potri.014G115600 [exp] 621 / 0 AT5G26751 782 / 0.0 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) Potri.013G004700 [exp] 620 / 0 AT5G26751 782 / 0.0 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) Potri.014G075100 [exp] 590 / 0 AT4G00720 778 / 0.0 SHAGGY-LIKE PROTEIN KINASE THETA, shaggy-like protein kinase 32 (.1) Potri.002G155000 [exp] 589 / 0 AT4G00720 772 / 0.0 SHAGGY-LIKE PROTEIN KINASE THETA, shaggy-like protein kinase 32 (.1) Potri.003G005900 [exp] 583 / 0 AT1G09840 732 / 0.0 hypersensitive induced reaction 1, shaggy-like protein kinase 41 (.1.2.3.4.5.6) Potri.004G225700 [exp] 581 / 0 AT1G09840 728 / 0.0 hypersensitive induced reaction 1, shaggy-like protein kinase 41 (.1.2.3.4.5.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10007291 pacid=23142482 polypeptide=Lus10007291 locus=Lus10007291.g ID=Lus10007291.BGIv1.0 annot-version=v1.0 ATGGCCGCCGCCGCCACCGACGACAAGGAATTGTCTGCCCATGGGAACGATCCAGTTACAGGGCACATTATTTCCACCACAATTGGGGGTAAAAATGGAG AACCAAAGCAGACGATTAGTTACATGGCGGAGCGAGTAGTGGGGACTGGATCTTTTGGTATTGTCTTCCAAGCTAAATGCTTGGAAACTGGGGAGACGGT GGCAATTAAGAAAGTGTTACAGGACAGACGATACAAAAACCGTGAGCTGCAGCTGATGAGGGTTATGGATCACCCGAATGTGATATCCTTGAAGCATTGT TTCTTTTCGACGACAAGCAACAATGAGCTTTTTCTCAACTTGGTTATGGAGTATGTTCCGGAGAGCATGTACCGGGTTCTGAAGCATTATAGCAACGCCA AGCAGGCGATGCCTCTTATCTATGTCAAACTATATGCATACCAGATTTTCCGGGGATTGGCATATATTCACAATGTTCCTGGAGTTTGCCATCGTGATTT GAAGCCTCAAAACGTTCTGGTTGATCCCCTCACTCACCAAGTTAAGCTTTGTGATTTTGGAAGTGCAAAAGTGCTGGTCAAGGGTGAAGCTAACATATCA TACATCTGCTCTCGCTTCTATCGTGCTCCCGAACTGATATTCGGAGCCACCGAATATACAACTTCAATTGATATTTGGTCGGCCGGTTGTGTTCTTGCTG AGCTTCTTCTGGGCCAGCCATTATTCCCTGGAGAAAATGCAGTTGACCAGCTTGTTGAGATCATCAAGGTTCTTGGCACCCCCACAAGAGAAGAAATTCG CTGCATGAATCCCAACTACACTGATTTCAGGTTCCCACAGATTAAAGCACACCCATGGCACAAGGTTTTCCACAAGAGGATGCCTCCGGAGGCAATTGAT TTAACCTCGCGGCTATTGCAATACTCCCCAAGCCTTCGCTGTACAGCGTTGGAAGCATGTGCCCATCCGTTCTTCGATGAACTCAGAGACCCTAATGTCC GCTTACCAAATGGCCGCTCCGTACCCATTCTCTTCAACTTCAAACAGGAGCTTAACGGTACTTCTCCCGAACTGGTCAACAAGTTGATCCCAGACCACGT GAAACGGCAGATGGGTCTAAACTTCTTGGTCGGAACATAA
AA sequence Show only first row Show all	>Lus10007291 pacid=23142482 polypeptide=Lus10007291 locus=Lus10007291.g ID=Lus10007291.BGIv1.0 annot-version=v1.0 MAAAATDDKELSAHGNDPVTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKNRELQLMRVMDHPNVISLKHC FFSTTSNNELFLNLVMEYVPESMYRVLKHYSNAKQAMPLIYVKLYAYQIFRGLAYIHNVPGVCHRDLKPQNVLVDPLTHQVKLCDFGSAKVLVKGEANIS YICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKVLGTPTREEIRCMNPNYTDFRFPQIKAHPWHKVFHKRMPPEAID LTSRLLQYSPSLRCTALEACAHPFFDELRDPNVRLPNGRSVPILFNFKQELNGTSPELVNKLIPDHVKRQMGLNFLVGT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18710		DWF12, UCU1, BI...	ULTRACURVATA 1, DWARF 12, BRAS...		Lus10007291 [exp]	0	1
AT2G47850	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10007941 [exp]	2.0	0.8165
AT4G00150	GRAS	ATHAM3, SCL6, L...	LOST MERISTEMS 3, ARABIDOPSIS ...		Lus10004353 [exp]	4.5	0.7965
AT1G54460			TPX2 (targeting protein for Xk...		Lus10006563 [exp]	5.5	0.7589
AT4G21610		LOL2	lsd one like 2 (.1)		Lus10020766 [exp]	5.7	0.7790
AT3G22680		RDM1	RNA-DIRECTED DNA METHYLATION 1...		Lus10006598 [exp]	8.9	0.7315
AT2G25920			unknown protein		Lus10001457 [exp]	9.8	0.7133
AT4G00150	GRAS	ATHAM3, SCL6, L...	LOST MERISTEMS 3, ARABIDOPSIS ...		Lus10028934 [exp]	11.0	0.7772
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10005897 [exp]	11.7	0.7649
AT2G01060	GARP		myb-like HTH transcriptional r...		Lus10039124 [exp]	11.7	0.7302
AT3G53900		UPP, PYRR	PYRIMIDINE R, uracil phosphori...		Lus10012654 [exp]	17.2	0.7544

Compare expression of checked genes

Lus10007291 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.