Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45780 748 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G25560 599 / 0 NIK2 NSP-interacting kinase 2 (.1.2.3) AT5G16000 575 / 0 NIK1 NSP-interacting kinase 1 (.1) AT1G60800 574 / 0 NIK3 NSP-interacting kinase 3 (.1) AT2G23950 545 / 0 Leucine-rich repeat protein kinase family protein (.1) AT4G30520 520 / 1e-178 SARK SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE, Leucine-rich repeat protein kinase family protein (.1) AT1G71830 459 / 3e-155 ATSERK1, SERK1 somatic embryogenesis receptor-like kinase 1 (.1) AT1G34210 455 / 1e-153 ATSERK2, SERK2 somatic embryogenesis receptor-like kinase 2 (.1) AT4G33430 452 / 2e-152 SERK3, RKS10, ELG, BAK1, ATSERK3, ATBAK1 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) AT5G10290 432 / 6e-145 leucine-rich repeat transmembrane protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029241 [exp] 1054 / 0 AT5G45780 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030591 [exp] 584 / 0 AT1G60800 929 / 0.0 NSP-interacting kinase 3 (.1) Lus10030898 [exp] 582 / 0 AT1G60800 931 / 0.0 NSP-interacting kinase 3 (.1) Lus10034350 [exp] 579 / 0 AT5G16000 1018 / 0.0 NSP-interacting kinase 1 (.1) Lus10005103 [exp] 573 / 0 AT5G16000 998 / 0.0 NSP-interacting kinase 1 (.1) Lus10019145 [exp] 554 / 0 AT5G16000 935 / 0.0 NSP-interacting kinase 1 (.1) Lus10034413 [exp] 551 / 0 AT5G16000 937 / 0.0 NSP-interacting kinase 1 (.1) Lus10019963 [exp] 539 / 0 AT2G23950 907 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10015484 [exp] 525 / 0 AT2G23950 910 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G059100 [exp] 889 / 0 AT5G45780 837 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G068700 [exp] 883 / 0 AT5G45780 819 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G043200 [exp] 598 / 0 AT1G60800 925 / 0.0 NSP-interacting kinase 3 (.1) Potri.008G188800 [exp] 594 / 0 AT1G60800 930 / 0.0 NSP-interacting kinase 3 (.1) Potri.017G108000 [exp] 592 / 0 AT5G16000 995 / 0.0 NSP-interacting kinase 1 (.1) Potri.004G108200 [exp] 588 / 0 AT5G16000 1006 / 0.0 NSP-interacting kinase 1 (.1) Potri.008G110300 [exp] 578 / 0 AT3G25560 918 / 0.0 NSP-interacting kinase 2 (.1.2.3) Potri.010G134100 [exp] 578 / 0 AT3G25560 927 / 0.0 NSP-interacting kinase 2 (.1.2.3) Potri.006G179400 [exp] 546 / 0 AT2G23950 889 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G101300 [exp] 520 / 6e-179 AT4G30520 837 / 0.0 SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE, Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10007292 pacid=23142479 polypeptide=Lus10007292 locus=Lus10007292.g ID=Lus10007292.BGIv1.0 annot-version=v1.0 ATGGCGATGAAGAAGGAGATGAAGGATGAGAAAGGTGTAATGGCGGGTTGGGATTTGAACTCCGTTGATCCCTGCACTTGGAACATGGTCGGCTGTTCTA CAGAAGGGTTTGTTGTTTCTTTGGAAATGGCAAGCATGGGATTGTCTGGGACACTATCCACCAGTGTTGGGAACTTGAATCACTTGAGAACAATGCTATT GCAGAATAATTTGCTAGCTGGGTCGATTCCAGCTGAGATAGGAAGGCTCTCTGAGCTTCAAACTCTTGACCTGTCTGGCAACCAGTTTGAAGGCAACATT CCAACCGATTTGGGACTTTTGAGCCGTCTAACTTACTTGCGGCTTAGCAGAAACAAGTTATCCGGCCAGATTCCGGGACTAGTTGCTAATCTCACTGGAC TCTCATTCTTGGATTTATCATACAACAATCTTAGTGGACCTTCACCGAAAATACTAGCAAAAGGCTATAGCATCACAGGGAATAGTCTTCTTTGTGGTGT GTCATCGACAAAGGGATGTTCGGGTGTCTTGAAGCCGGTGAATGAAACAGTTACCTCGCCGAAGGCCAGCAGCCACCGGCATTGGTGGCTGGCTGTTGTC TTGGGATTCAGTTGTACATTTTTTGTGTCTCTCATCCTACTTGTTTGCTGGGTGAATTGGTACCGGACCCGTCTACTCTCTACTTCATGCGTGCAGCAGG ACTACGATTTCGAAATCGGTCATCTGAAGAGATTCTCATTTCGCGAGCTGCAAGTTGCTACAGGGAACTTTAGTTCGAGGAACATCCTTGGTCAAGGAGG CTTTGGAGTTGTCTATAGAGGTTGCTTGCCAAACAAGACATTGGTGGCAGTTAAGAGGCTGAAGGATCCGAACTACACCGGGGAAATGCAGTTCCAGACC GAGGTGGAAATGATTGGATTGGCCTTGCATCGAAACCTCTTGCGTCTGTACGGGTTCTGTATGACACCTGAGGAAAGGATGCTCGTGTATCCTTATATGC CGAATGGGAGTGCAGCTGATCGATTGCGAGAGACATTTGGTGACAGGCCATGTTTGAGTTGGAACAGAAGGATCCGAATTGCGCTAGGGGCTGCACGAGG GCTTCTCTACTTGCACGAGCAATGCAATCCTCGAATCATTCACAGGGATGTCAAGGCTGCAAACATATTACTGGACGAGAGTTTCGAAGCTGTTGTGGGA GATTTCGGCCTCGCTAAGCTGTTGGACCGAATGGACTCCCATGTCACGACTGCGGTACGTGGCACAATTGGACACATTGCACCGGAGTATCTTTCGACCG GCCAGTCCTCCGAAAAGACTGATGTCTTTGGATTTGGCATCCTGCTTTTGGAACTCATCACAGGTCAGAAGGCATTGGATGCTGGAAATGGTCAGGTCCA GAAAGGCATGATCCTTGACTGGGTGAAAACATTATTCGAGGAGAAAAGGCTAGAGATGCTAATAGACAGAGATCTCAAGGGATGTTTCGAATTGTCGGAG CTTGAAACAGCAGTAGAACTAGCACTACAATGCACTCAATCACATCCGGCTCTCCGGCCTAAGATGTCAGAAGTGTTGAAGGTCCTCGATGGTCTCGTAG GTCAGTCAGTCATCGAAGAACCGCAATCCGGAGTAGGATTTCCATCATCAAGCACACAGAACGAGGCAGCAGGAGGGCCTTCCAGTTTCTCTAGTCGTCA CAACGACATTCGCGAAGAATCTTCGTTCATCATGGAAGCCATGGAACTCTCCGGCCCTCGATGA
AA sequence Show only first row Show all	>Lus10007292 pacid=23142479 polypeptide=Lus10007292 locus=Lus10007292.g ID=Lus10007292.BGIv1.0 annot-version=v1.0 MAMKKEMKDEKGVMAGWDLNSVDPCTWNMVGCSTEGFVVSLEMASMGLSGTLSTSVGNLNHLRTMLLQNNLLAGSIPAEIGRLSELQTLDLSGNQFEGNI PTDLGLLSRLTYLRLSRNKLSGQIPGLVANLTGLSFLDLSYNNLSGPSPKILAKGYSITGNSLLCGVSSTKGCSGVLKPVNETVTSPKASSHRHWWLAVV LGFSCTFFVSLILLVCWVNWYRTRLLSTSCVQQDYDFEIGHLKRFSFRELQVATGNFSSRNILGQGGFGVVYRGCLPNKTLVAVKRLKDPNYTGEMQFQT EVEMIGLALHRNLLRLYGFCMTPEERMLVYPYMPNGSAADRLRETFGDRPCLSWNRRIRIALGAARGLLYLHEQCNPRIIHRDVKAANILLDESFEAVVG DFGLAKLLDRMDSHVTTAVRGTIGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQKALDAGNGQVQKGMILDWVKTLFEEKRLEMLIDRDLKGCFELSE LETAVELALQCTQSHPALRPKMSEVLKVLDGLVGQSVIEEPQSGVGFPSSSTQNEAAGGPSSFSSRHNDIREESSFIMEAMELSGPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45780			Leucine-rich repeat protein ki...		Lus10007292 [exp]	0	1
AT1G63610			unknown protein		Lus10016008 [exp]	2.8	0.8137
AT1G32070		ATNSI	nuclear shuttle interacting (....		Lus10035604 [exp]	5.7	0.8226
AT2G35130			Tetratricopeptide repeat (TPR)...		Lus10018318 [exp]	7.4	0.7416
AT1G78915			Tetratricopeptide repeat (TPR)...		Lus10034802 [exp]	7.5	0.8041
AT1G26180			unknown protein		Lus10031917 [exp]	14.4	0.7445
AT5G45780			Leucine-rich repeat protein ki...		Lus10029241 [exp]	14.5	0.7610
AT5G25800			Polynucleotidyl transferase, r...		Lus10028637 [exp]	15.3	0.7790
AT3G07740		HXA2, HXA02, HA...	homolog of yeast ADA2 2A (.1.2...		Lus10000540 [exp]	16.3	0.7816
AT5G55760		SRT1	sirtuin 1 (.1)		Lus10016619 [exp]	16.4	0.7963
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Lus10012457 [exp]	17.0	0.7135

Compare expression of checked genes

Lus10007292 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.