Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34200 103 / 1e-26 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G05830 100 / 2e-25 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G01070 99 / 5e-25 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT5G59000 95 / 2e-23 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G37950 92 / 2e-22 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G63780 57 / 2e-09 SHA1 shoot apical meristem arrest 1, RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G08750 57 / 2e-09 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3) AT5G03180 57 / 2e-09 RING/U-box superfamily protein (.1.2) AT3G09760 56 / 5e-09 RING/U-box superfamily protein (.1) AT5G60580 56 / 1e-08 RING/U-box superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029242 [exp] 427 / 1e-153 AT5G05830 101 / 3e-26 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10015273 [exp] 186 / 6e-58 AT2G34200 106 / 3e-27 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10040240 [exp] 109 / 5e-29 AT5G05830 187 / 4e-60 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10028249 [exp] 108 / 7e-29 AT5G05830 184 / 8e-59 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10017197 [exp] 105 / 2e-27 AT5G05830 182 / 1e-57 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10021113 [exp] 102 / 7e-27 AT5G05830 167 / 7e-53 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10027744 [exp] 97 / 3e-24 AT5G05830 162 / 8e-50 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10035549 [exp] 95 / 2e-23 AT5G05830 157 / 4e-48 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10016451 [exp] 89 / 2e-21 AT5G05830 164 / 1e-51 RING/FYVE/PHD zinc finger superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G059200 [exp] 173 / 4e-52 AT5G05830 107 / 3e-27 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.011G068800 [exp] 171 / 3e-51 AT5G05830 91 / 4e-21 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.006G094000 [exp] 108 / 8e-29 AT5G05830 192 / 8e-62 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.008G062600 [exp] 106 / 6e-28 AT5G05830 211 / 7e-70 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.016G105900 [exp] 105 / 2e-27 AT5G05830 191 / 2e-61 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.010G195100 [exp] 104 / 2e-27 AT5G05830 206 / 9e-68 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.009G039700 [exp] 94 / 2e-23 AT5G05830 159 / 2e-49 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.001G246700 [exp] 92 / 5e-23 AT5G59000 159 / 2e-49 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.009G013300 [exp] 57 / 4e-09 AT5G60580 492 / 3e-171 RING/U-box superfamily protein (.1.2.3.4) Potri.007G098900 [exp] 56 / 8e-09 AT5G08750 411 / 2e-143 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10007293 pacid=23142483 polypeptide=Lus10007293 locus=Lus10007293.g ID=Lus10007293.BGIv1.0 annot-version=v1.0 ATGGAGGAAGAGAAAGCTGCTGGGGATTCGGGTCAACGTAACGGAATTGGTATGGAGATAGTCAACAAACCGTCAGATTCAGGAAAGGCGGAGAATTTGG ACAGGAAAGGAGAGGATTTGCCGTCGAGTGTCGGCTTGGCAAATGATCGAACAGGGGGGGGGCAAGGAAATGGGGAGAGCTCGAACGAGGGTAGTACGGT AATTGTGATCAATTTGAATGTTGATGAGGCGAAACTACTGCCGAAAGGGGATGATGATAAGGAACAATTGTCGTGTGTGATTGATGTTAAGTGTAAGGAT AGCTGGGATGGGGAAATGGTTTGCAGGATTTGTCATTTGGGTTCTGAAGGGTCGATGGAAGAAGCAGTAAGTAGTGGTGATCATATTGGTGGTGGTGTTA GTGGGAGTTCCATGGAGCTCATTCAGCTTGGTTGTGGGTGTAAAGATGAGCTTGGTGTTGCTCATCCTCATTGTGCTGAAGCCTGGTTCAAGCTTAAAGG AAACAGAGTGTGCGAAATCTGCGGGGAGGCGGCGAAGAACATCACAGGCATTGTTGTGGACAGAGACAGAATCCTGGATGCGTTGAACCACGTCAGATTA ATGAACGAAGCAGGCGCCGCGGCTTACAACACCGCGGAGAGTCGACGAGGAGGATGTTGGAAGGGACAACCTTTCTGCAACTTCTTGATGGCTTGTCTGG TAATTGCTTTCGTGCTGCCATGGTTTTTCCGTGTAAATATGTTCTGA
AA sequence Show only first row Show all	>Lus10007293 pacid=23142483 polypeptide=Lus10007293 locus=Lus10007293.g ID=Lus10007293.BGIv1.0 annot-version=v1.0 MEEEKAAGDSGQRNGIGMEIVNKPSDSGKAENLDRKGEDLPSSVGLANDRTGGGQGNGESSNEGSTVIVINLNVDEAKLLPKGDDDKEQLSCVIDVKCKD SWDGEMVCRICHLGSEGSMEEAVSSGDHIGGGVSGSSMELIQLGCGCKDELGVAHPHCAEAWFKLKGNRVCEICGEAAKNITGIVVDRDRILDALNHVRL MNEAGAAAYNTAESRRGGCWKGQPFCNFLMACLVIAFVLPWFFRVNMF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34200			RING/FYVE/PHD zinc finger supe...		Lus10007293 [exp]	0	1
AT5G12300			Calcium-dependent lipid-bindin...		Lus10001346 [exp]	1.4	0.9065
AT3G57540			Remorin family protein (.1)		Lus10026302 [exp]	1.4	0.9268
AT3G57540			Remorin family protein (.1)		Lus10042367 [exp]	2.4	0.9017
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10042419 [exp]	3.5	0.8724
AT1G29530			unknown protein		Lus10015254 [exp]	6.0	0.8301
AT2G39570		ACR9	ACT domain repeats 9, ACT doma...		Lus10004948 [exp]	10.6	0.8233
AT1G61600			Protein of unknown function (D...		Lus10035372 [exp]	11.0	0.8463
AT3G15810			Protein of unknown function (D...		Lus10032602 [exp]	11.6	0.8602
AT4G14540	CCAAT	NF-YB3	"nuclear factor Y, subunit B3"...		Lus10001177 [exp]	15.3	0.8020
AT3G18420			Protein prenylyltransferase su...		Lus10035087 [exp]	15.5	0.8224

Compare expression of checked genes

Lus10007293 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.