Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18760 346 / 6e-116 AtRLP51 receptor like protein 51 (.1) AT5G45770 284 / 9e-92 AtRLP55 receptor like protein 55 (.1) AT1G58190 89 / 2e-18 AtRLP9 receptor like protein 9 (.1.2) AT4G20270 87 / 4e-18 BAM3 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) AT2G42800 86 / 4e-18 AtRLP29 receptor like protein 29 (.1) AT5G49660 86 / 1e-17 XIP1 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G65710 84 / 4e-17 HSL2 HAESA-like 2 (.1) AT3G11080 84 / 5e-17 AtRLP35 receptor like protein 35 (.1) AT5G48940 84 / 5e-17 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G25910 84 / 6e-17 AtRLP52 receptor like protein 52 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015226 [exp] 452 / 3e-157 AT4G18760 401 / 2e-137 receptor like protein 51 (.1) Lus10005430 [exp] 300 / 1e-100 AT4G18760 293 / 3e-98 receptor like protein 51 (.1) Lus10029243 [exp] 163 / 6e-49 AT4G18760 168 / 2e-51 receptor like protein 51 (.1) Lus10039985 [exp] 134 / 1e-37 AT5G45770 120 / 3e-33 receptor like protein 55 (.1) Lus10037840 [exp] 94 / 3e-20 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037705 [exp] 92 / 4e-20 AT3G12610 438 / 6e-154 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) Lus10005017 [exp] 91 / 4e-19 AT4G08850 562 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10031377 [exp] 89 / 4e-19 AT3G20820 433 / 3e-152 Leucine-rich repeat (LRR) family protein (.1) Lus10015700 [exp] 87 / 8e-19 AT3G12610 343 / 3e-118 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G069500 [exp] 471 / 1e-164 AT4G18760 375 / 4e-127 receptor like protein 51 (.1) Potri.004G059500 [exp] 464 / 7e-162 AT4G18760 375 / 7e-127 receptor like protein 51 (.1) Potri.008G211800 [exp] 93 / 3e-20 AT2G42800 474 / 7e-166 receptor like protein 29 (.1) Potri.019G058600 [exp] 91 / 3e-19 AT3G56370 1174 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G104600 [exp] 91 / 3e-19 AT2G15080 421 / 5e-129 receptor like protein 19 (.1.2) Potri.019G078400 [exp] 90 / 5e-19 AT1G72180 1060 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.006G014066 [exp] 89 / 9e-19 AT1G53420 272 / 3e-79 Leucine-rich repeat transmembrane protein kinase (.1) Potri.013G091000 [exp] 89 / 1e-18 AT3G56370 1227 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G115900 [exp] 89 / 2e-18 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G048800 [exp] 88 / 3e-18 AT1G08590 1306 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10007294 pacid=23142464 polypeptide=Lus10007294 locus=Lus10007294.g ID=Lus10007294.BGIv1.0 annot-version=v1.0 ATGCCACCACTACTCCCACCACCGCTCCTCCTCCTCCTCCTCTTCACCTCCGCCGCCGCCGTCACACCACCTCCATCTCCCTCCCCAACCTCCTCCCCTG TCACCGGACCTCCTTCAACTTCCTCCCCTTCCACATTAGACCCCAAACAGCTGAGAGCACTACAATCCCTCAGCATCCCAACATCCAAAGACCCATGTTT GCAGCCTTCCAACTTCACAATCTGCGACTCTGCAACTCCCTTCCGCCACCTCCTCTCCCTCCACCTCTTCAACTGCTCTTCCGACGCCGTTTCCCTCTCT TACACAGCTCTCAAGTCTCTCTCAACTCTCCAAACCCTCTCCTTCACCGACTGCCCCATAACCCCAATCCGTTTCCCTTCAGATCTCGCTTTATCCCTCA AATCTTTCTCTTGTGCGCATTCTCTCAAACACCTTACGGGAGTCTGGCTTTCCCGCTTCACAAACCTCACCGACCTCACCGTAACCAATGTCCCAATCAA CGCCAGCGGACTCTACGTCATCCTCGCCCATATGCACAAGCTCACGTCGCTCACCATCACAAACGCCAACCTCACCGGAAATATTCCGAAGCATTTCGCC GGCGGCGACAATAATCTGACCCACGTCGATCTTTCCGGTAATGAGCTTAGAGGAAGGATACCCAGCTCGATCGCTGTCCTCGAGAATCTCGAGACGCTTA ATCTCTCCTCCAATGCTCTCTCCGGCGAGCTGCCGGAAAACTTCGGCGATCTAATCGCGTTGAAAAACGTGTCGATGGCGTCCAATGAGTTATCCGGTTC GATTCCGGATTCGATGTCGGAGATTCCCGAGCTGCAGCATCTCGACCTGAGTTCGAACCGATTCAACGGCACAATCCCACAGTTCTTCTCCGAGATGAAG CATCTCAAGCATTTGAACCTCGCCGACAACGCGTTCCAGGGCGTTTTGCCTTTCAATCTGACGTTTCTGAAGAGACTGGAAGTTTTCAGAATCGGGGGGA ATGACAATCTGTGTTACAACCGCACGGCGTTTTCGTCGTCGAAGATGAAGCTTGGGATAGCTCCTTGCGACAAGCACGGGTTGCCGATGCCGCCGCCGCC GTCGAAGGATATTACTTCCGGCGGAGGAGACGGCGATGATGATGGCGATTCGTCGGATTACGACGACGGAGAGGACAGCAGTTCGAGTGGGAAGAAGGAT GAGCATCATCATGGTCCGAACAAGGTGGTTCTTGGGATCGCCATTGCTTTGTCTTCCATTGTTTTTCTTATCGTCTTCCTTATTCTTCTGTCGAAGAGAT GCACTTAA
AA sequence Show only first row Show all	>Lus10007294 pacid=23142464 polypeptide=Lus10007294 locus=Lus10007294.g ID=Lus10007294.BGIv1.0 annot-version=v1.0 MPPLLPPPLLLLLLFTSAAAVTPPPSPSPTSSPVTGPPSTSSPSTLDPKQLRALQSLSIPTSKDPCLQPSNFTICDSATPFRHLLSLHLFNCSSDAVSLS YTALKSLSTLQTLSFTDCPITPIRFPSDLALSLKSFSCAHSLKHLTGVWLSRFTNLTDLTVTNVPINASGLYVILAHMHKLTSLTITNANLTGNIPKHFA GGDNNLTHVDLSGNELRGRIPSSIAVLENLETLNLSSNALSGELPENFGDLIALKNVSMASNELSGSIPDSMSEIPELQHLDLSSNRFNGTIPQFFSEMK HLKHLNLADNAFQGVLPFNLTFLKRLEVFRIGGNDNLCYNRTAFSSSKMKLGIAPCDKHGLPMPPPPSKDITSGGGDGDDDGDSSDYDDGEDSSSSGKKD EHHHGPNKVVLGIAIALSSIVFLIVFLILLSKRCT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18760		AtRLP51	receptor like protein 51 (.1)		Lus10007294 [exp]	0	1
					Lus10016903 [exp]	2.4	0.9454
AT4G18760		AtRLP51	receptor like protein 51 (.1)		Lus10029243 [exp]	4.2	0.9172
AT3G07390		AIR12	Auxin-Induced in Root cultures...		Lus10038224 [exp]	6.0	0.9336
AT5G59510		RTFL5, DVL18	DEVIL 18, ROTUNDIFOLIA like 5 ...		Lus10040784 [exp]	6.9	0.8926
AT5G06710	HD	HAT14	homeobox from Arabidopsis thal...		Lus10016254 [exp]	7.3	0.9065
AT3G14240			Subtilase family protein (.1)		Lus10013187 [exp]	7.5	0.9233
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10026499 [exp]	7.9	0.9450
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10019929 [exp]	9.3	0.9446
AT1G05420	OFP	ATOFP12, OFP12	ARABIDOPSIS THALIANA OVATE FAM...		Lus10014677 [exp]	12.6	0.9403
AT5G23400			Leucine-rich repeat (LRR) fami...		Lus10013454 [exp]	13.4	0.9419

Compare expression of checked genes

Lus10007294 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.