Lus10007295 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G24880 423 / 6e-147 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029244 656 / 0 AT4G24880 543 / 0.0 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G095400 458 / 2e-160 AT4G24880 603 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10007295 pacid=23142447 polypeptide=Lus10007295 locus=Lus10007295.g ID=Lus10007295.BGIv1.0 annot-version=v1.0
ATGGCGCCACCCGATTCCCGCCGGCCGTTCAAAAGAGCGACGGTCTCCGATCAACAGAGGCGCCGGGAGCTGACCTTACAGAGGCAATCTCAGAGCCGAC
ATTATGCTCAGCAGCGAGCAAGATGCTTGGCATCCACCATTCTCTCTCTTGATCATTCCCCAGCTTCGGAGCCCCAACTTCCGGAACCCGATGCTGTACT
CGAATCAGACCCCATGGATTCCGAAGCTCGGCCGGACGTCCGACGGAAGTCAAAGTGGAGAGCAGCAGAAGTTCGCAACTCGTTCGCCAGCCAGCTAATG
CTTCCCGAATGGATGATTGACATTCCTGATCACTTGAGCCAAGATTGGTACGCAAATGTTTTGCCCACCAGGCTGTATGAGAAAAGTCCTCCTCGTCATA
GAGTATGTCTTTGCGAGGCCCGCCGGGACCGTTGTTTCGTGGTTGCCTCTAACGGAACGACGGTTAGCAGAGAACGGAACGGCTCAATCCTACACAATTT
CCCATCTGCTCTGCCTAACGGAGCAAAGACGAGACAGCCATCAGGGCCTGCGCATTCTTACTCCATTCTGGACTGCATATTTCATGAGGCTGATCAAACA
TATTATGTCATTGACATGGTTTGCTATGGAAGCCACTCGCTCTATGACTGTACAGCTGAGTTCAGGTTCTTTTGGTTGAATCCCAAGCTCGAGGAGACTG
GGGCTTCTGCCTCTCCGTCTTATCATCCCAAATACAAATTCTGCGCAGTCCCAATTTACGAATGTGATCAGAAAGGTCTGATTGCTACTTATGAAGGAAA
AACGCCTTATGTCAAAGACGGTTTGCTGTTCTACAACAAACATTCACATTATCAGCACGGGAGTACGCCGCTAGCATTAGTCTGGAAGGATGACAAATGC
AGTCAATATGTCATTGACGCAGACGGCGCAGGGCAAGTTCCAAACCAGCAACTGTCAGCGCTGCGACCAGGAAATCTCTTACGATTCTCTGTTAATGATG
GAGGGTTAAGCTTCGTGGATGGGAAGCTTGAGAAAGCAGATATTCAGTATCTCGGGAAATCCAATCGAGCGCGTGCTTTTGCAGATAGTTTCTCCAAGGT
TATGTTTCAGCATATGGCAAGGCATTCTCCTCTGAAGTTTGATGATCTACTAGCAGCTGTTTGTTCATCGGAAGCTGAGCAGAACGTACATCCAGATGTT
GAGATGTCTGGTTGA
AA sequence
>Lus10007295 pacid=23142447 polypeptide=Lus10007295 locus=Lus10007295.g ID=Lus10007295.BGIv1.0 annot-version=v1.0
MAPPDSRRPFKRATVSDQQRRRELTLQRQSQSRHYAQQRARCLASTILSLDHSPASEPQLPEPDAVLESDPMDSEARPDVRRKSKWRAAEVRNSFASQLM
LPEWMIDIPDHLSQDWYANVLPTRLYEKSPPRHRVCLCEARRDRCFVVASNGTTVSRERNGSILHNFPSALPNGAKTRQPSGPAHSYSILDCIFHEADQT
YYVIDMVCYGSHSLYDCTAEFRFFWLNPKLEETGASASPSYHPKYKFCAVPIYECDQKGLIATYEGKTPYVKDGLLFYNKHSHYQHGSTPLALVWKDDKC
SQYVIDADGAGQVPNQQLSALRPGNLLRFSVNDGGLSFVDGKLEKADIQYLGKSNRARAFADSFSKVMFQHMARHSPLKFDDLLAAVCSSEAEQNVHPDV
EMSG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G24880 unknown protein Lus10007295 0 1
AT3G19180 ATCDP1, ARC6H, ... A. THALIANA CHLOROPLAST DIVISI... Lus10042298 2.8 0.8829
AT5G43310 COP1-interacting protein-relat... Lus10011809 16.7 0.8550
AT4G21060 Galactosyltransferase family p... Lus10036154 17.5 0.8146
AT4G10920 KELP transcriptional coactivator p1... Lus10030245 17.7 0.8271
AT1G63700 EMB71, MAPKKK4,... YODA, MAP KINASE KINASE KINASE... Lus10038858 18.9 0.8529
AT1G33330 Class I peptide chain release ... Lus10008558 19.2 0.8188
AT1G15750 TPL, WSIP1 WUS-INTERACTING PROTEIN 1, TOP... Lus10023119 20.9 0.8430
AT3G12940 2-oxoglutarate (2OG) and Fe(II... Lus10027382 24.1 0.7866
AT2G42010 PLDBETA1 phospholipase D beta 1 (.1) Lus10005782 24.4 0.8358
AT1G50710 unknown protein Lus10043109 24.7 0.8253

Lus10007295 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.