Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45760 469 / 1e-165 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G61210 57 / 2e-08 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G11160 53 / 4e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 52 / 5e-07 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 49 / 3e-06 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 45 / 9e-05 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 43 / 0.0004 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G24320 42 / 0.0007 Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G43770 42 / 0.0007 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029246 [exp] 712 / 0 AT5G45760 488 / 7e-174 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10014674 [exp] 53 / 2e-07 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 53 / 2e-07 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10018458 [exp] 51 / 2e-06 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011224 [exp] 51 / 2e-06 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10041007 [exp] 46 / 4e-05 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10002860 [exp] 42 / 0.0007 AT2G43770 617 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10013452 [exp] 42 / 0.0008 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G069700 [exp] 528 / 0 AT5G45760 476 / 4e-169 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.008G002300 [exp] 48 / 9e-06 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 48 / 1e-05 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G087200 [exp] 47 / 2e-05 AT1G71840 515 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.002G051900 [exp] 46 / 3e-05 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 45 / 9e-05 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.019G096900 [exp] 42 / 0.0005 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G077800 [exp] 42 / 0.0009 AT5G51980 391 / 5e-132 Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10007297 pacid=23142457 polypeptide=Lus10007297 locus=Lus10007297.g ID=Lus10007297.BGIv1.0 annot-version=v1.0 ATGGACCAGCCCAACAGAATGAGACCAACACAGTGTGGCCTTTGGGCTGTCACACAGCCCATAACCTTTTTCACCCGCAAACGGCAGAAAATATTCCAGC TAGAATTTGAACACCGGCCTACGGCGGAATACGACCAAAAGAAAAAGAACGGGGTAATCGCCGCCGTGATGACGGAGCCTAGAAAGCTGAGAGGGCACAA ATCCACCGCCACTTGCTGCATAGCCTCGCGAGACCGTCCTGGAATCGTGGTCACCTCCGGCGAGGATGGCCGTGTTTGCTGGTTTGATATGCGATGCAAA GAGGTGCAGTTTGTTATCGAGGTCGGGAAAGATCCTATTTCGTCATTGTGCTTCAAGCCAGGCAGTGAAGATATCCTCTATGTTTCCTCTGGAAATGAAG TCAAGTGTTTGGATGTGCTCATGGCTAATGAATGGAAGACACTGAAAGCTTACAACTACAACAAGGATGAGATAAATCAGATTGCTTGCAACTCGAGAGC AGCTTTCCTTGCTTCTACAGATGATGGTGGTGACGTTAAGATTATCGACATTCACCAGCACTGCTTGTATAAAACTCTCAGGGCTGGCCACTCAAGTATC TGCAGTAGTGTGCAATTTATCCCTTGGAGACCTTGGGAAGTCATCACTGGAGGTCTCGACTCAAAGCTCATCATGTGGGACTTTTCAAAAGGGCGGCCAA TCAAAATTGTCGATTTCGGTATGCCTGATGCTGCGACGAGCAGTAGTAACACATCACAGTGTCTCAATCCTGCTTTTGTCCACTCAATAGTAGTTCCAGA CACCGACATGCTCGACAACTCGGGAAATATATGTGCGGTAGCCAGGGGTGATGGGGTTGTTGATGTGATAGATATTGAATCAGAACTTGCTGCTATAAGG TCGAAAACTTCATCAAAGGCAAAGAAAGGATCTCAAACCAAATTTAAAGAATCCACTTCAGTTGCAAGTGCAGAAACGCCAGAAACAACTCAAACCAGCA GCAGATTGCATCTGGATTACTCGTTGGGTGGCCATACTGCTGCGGTATCTTGTGTTGCATTCTCATTGTTCGGGGATAAGGGCAAGTTCATAGTTTCAGG AGGAAATGATAAATCAGTAAAGCTGTGGGATTGCTCTCGGCGCGATCAGGATAGCAGCAATCCGAATGGCCCTCTACATCACAGCATCAGTTTGAACAAA AAGGTGAACTGGATCTGTACAGCTCCCACCGAATCAGAGAACCTGGTCATATGCGACACAACCAAAGTCGTCAAGGTCTACTCAGTTTCATGA
AA sequence Show only first row Show all	>Lus10007297 pacid=23142457 polypeptide=Lus10007297 locus=Lus10007297.g ID=Lus10007297.BGIv1.0 annot-version=v1.0 MDQPNRMRPTQCGLWAVTQPITFFTRKRQKIFQLEFEHRPTAEYDQKKKNGVIAAVMTEPRKLRGHKSTATCCIASRDRPGIVVTSGEDGRVCWFDMRCK EVQFVIEVGKDPISSLCFKPGSEDILYVSSGNEVKCLDVLMANEWKTLKAYNYNKDEINQIACNSRAAFLASTDDGGDVKIIDIHQHCLYKTLRAGHSSI CSSVQFIPWRPWEVITGGLDSKLIMWDFSKGRPIKIVDFGMPDAATSSSNTSQCLNPAFVHSIVVPDTDMLDNSGNICAVARGDGVVDVIDIESELAAIR SKTSSKAKKGSQTKFKESTSVASAETPETTQTSSRLHLDYSLGGHTAAVSCVAFSLFGDKGKFIVSGGNDKSVKLWDCSRRDQDSSNPNGPLHHSISLNK KVNWICTAPTESENLVICDTTKVVKVYSVS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45760			Transducin/WD40 repeat-like su...		Lus10007297 [exp]	0	1
AT2G04865			Aminotransferase-like, plant m...		Lus10007358 [exp]	7.1	0.7877
					Lus10012138 [exp]	7.1	0.7331
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Lus10021766 [exp]	8.1	0.7864
AT2G44980		ASG3	ALTERED SEED GERMINATION 3, SN...		Lus10028186 [exp]	9.6	0.8070
AT1G19340			Methyltransferase MT-A70 famil...		Lus10032722 [exp]	10.1	0.8103
AT3G01800			Ribosome recycling factor (.1)		Lus10035226 [exp]	12.7	0.7830
AT1G75340	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10040585 [exp]	13.5	0.7269
AT1G75340	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10040567 [exp]	17.7	0.7255
AT1G63250			DEA(D/H)-box RNA helicase fami...		Lus10034109 [exp]	21.2	0.7532
					Lus10024539 [exp]	22.6	0.7730

Compare expression of checked genes

Lus10007297 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.