Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029247 [exp] 210 / 2e-70 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G059700 [exp] 56 / 7e-10 ND / Potri.011G069800 [exp] 53 / 4e-09 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007298 pacid=23142490 polypeptide=Lus10007298 locus=Lus10007298.g ID=Lus10007298.BGIv1.0 annot-version=v1.0 ATGGCAGAGTTTCATCACCTAATCGAGAGCCTTGACTCTCTCTGGTTCTTCTCCACCGTCTTCGACGACAACCCATATCCTCCAATCATCCCCACCGCCG AGAAACCAGCTCACCATCAATTGGAAGAACCGGAGAAAAAACAGAGCAACGACTCTGTTTTTCTGGTAGAGGAAACAATCAAGTTGCCGCCGCCGCCACC GGCGGAGGCGGCGGAGAAGAAGGAGGAGGAGGTTAGAGTGGAGTTAGTGGTGTTCGTGTCGAAGCCTGAAGCGGCATCGGAGAGGAGGAAGCGGCTGGCG AGGAGGTTGAGAAGCAAGAACAAGACGATAATATTGCTGGAGCTTGACCTCTGTTTCGACAACTTTTATTATTACAGAGGGTTGTACGGGCTTCCGGTGA TGAATCAGCAAACGGCGAGGAGGAAGAAGATGCCGCCGTTAAACGACTCGCTGGAGATGAAACGGCAGCTCAAGTCCTGGGCTCACGCCGTCGCCTGCAC GGTTAAGTGA
AA sequence Show only first row Show all	>Lus10007298 pacid=23142490 polypeptide=Lus10007298 locus=Lus10007298.g ID=Lus10007298.BGIv1.0 annot-version=v1.0 MAEFHHLIESLDSLWFFSTVFDDNPYPPIIPTAEKPAHHQLEEPEKKQSNDSVFLVEETIKLPPPPPAEAAEKKEEEVRVELVVFVSKPEAASERRKRLA RRLRSKNKTIILLELDLCFDNFYYYRGLYGLPVMNQQTARRKKMPPLNDSLEMKRQLKSWAHAVACTVK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10007298 [exp]	0	1
AT1G07570		APK1A	Protein kinase superfamily pro...		Lus10000954 [exp]	6.2	0.8833
AT4G00330		CRCK2	calmodulin-binding receptor-li...		Lus10017787 [exp]	6.8	0.8460
AT5G11330			FAD/NAD(P)-binding oxidoreduct...		Lus10013121 [exp]	8.5	0.8810
AT1G54730			Major facilitator superfamily ...		Lus10029966 [exp]	8.8	0.8858
AT2G29350		SAG13	senescence-associated gene 13 ...		Lus10040737 [exp]	12.0	0.8347
AT1G10320	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10010687 [exp]	12.6	0.8490
AT1G01750		ADF11	actin depolymerizing factor 11...		Lus10008489 [exp]	13.4	0.8795
AT3G11210			SGNH hydrolase-type esterase s...		Lus10004815 [exp]	16.4	0.8175
AT1G54730			Major facilitator superfamily ...		Lus10035354 [exp]	18.7	0.8535
AT5G41470			Nuclear transport factor 2 (NT...		Lus10024664 [exp]	20.5	0.8612

Compare expression of checked genes

Lus10007298 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.