Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42760 110 / 3e-29 unknown protein AT2G31560 52 / 5e-08 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2) AT1G05870 47 / 2e-06 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2), Protein of unknown function (DUF1685) (.3), Protein of unknown function (DUF1685) (.4) AT2G43340 42 / 0.0001 Protein of unknown function (DUF1685) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029248 [exp] 199 / 6e-64 AT2G42760 61 / 6e-11 unknown protein Lus10015228 [exp] 129 / 1e-36 AT2G42760 115 / 5e-31 unknown protein Lus10005429 [exp] 122 / 4e-34 AT2G42760 111 / 1e-29 unknown protein Lus10015227 [exp] 100 / 6e-26 AT2G42760 93 / 1e-22 unknown protein Lus10019924 [exp] 62 / 4e-11 AT2G42760 56 / 7e-09 unknown protein Lus10041518 [exp] 50 / 5e-07 AT3G26770 352 / 2e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026494 [exp] 39 / 0.0005 ND 36 / 0.004
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G059900 [exp] 137 / 6e-40 AT2G42760 99 / 6e-25 unknown protein Potri.011G069900 [exp] 131 / 2e-37 AT2G42760 89 / 4e-21 unknown protein Potri.006G129800 [exp] 75 / 1e-15 AT2G42760 65 / 4e-12 unknown protein Potri.007G126700 [exp] 49 / 8e-07 AT1G05870 188 / 7e-61 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2), Protein of unknown function (DUF1685) (.3), Protein of unknown function (DUF1685) (.4) Potri.017G032800 [exp] 47 / 3e-06 AT1G05870 190 / 1e-61 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2), Protein of unknown function (DUF1685) (.3), Protein of unknown function (DUF1685) (.4) Potri.001G372800 [exp] 40 / 0.001 AT3G15115 114 / 5e-29 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07939 [flax] [poplar] DUF1685 Protein of unknown function (DUF1685)
Representative CDS sequence Show only first row Show all	>Lus10007299 pacid=23142467 polypeptide=Lus10007299 locus=Lus10007299.g ID=Lus10007299.BGIv1.0 annot-version=v1.0 ATGGACGCAAGTGATTTCACTCACCTCTACGATTCGACGTGGTTCTTCGGTGCGACGATGCAGAAGAAGACTCTCAACACCCGCCGCCGTTCACTCTCCA CCTCTGATTCCCCTCCCGATTCCCCGACTCTGGCCGGGATGTACCTCCAGCTCCAGAAGCAGCAGCAGCAAAAATCTCCGATGCTCCGATCAGTGAGCGA GGACTACTTGTTTTCCAAGTCCGGTGAAGCTTCCCCGGATTCCGTCCTCTGCACGATCCTCTCCGGGACAGAGTTCACCGAGTCGGCTGAGGATTTGACC GTCGTCAGCTCTCCGCCGCTGCCACCGAAGTCGAAATCGAAGGCGGCGGCGGCGAGGAGGCGGAGGGCGAAGAAGGAGAGCGGAGGGCCGGCCAGCAAGA GCATGTCCTCTTTGGAATTCGAGGAGTTGAAAGGGTTTATGGATTTAGGATTCGTGTTCTCTGAGAAGGATAAAGAGTCGAGCTTGGTTTCGATTCTACC CGGGTTGCAGAGGTTGGGGAAAAACGAAGTGGAGGAGGAGGAGCAGGTGGCGGTGGCGAGGCCGTATCTGTCGGAGGCATGGGCGGTGCAGGAGGAGGAG AAGAGGAAGAAGAAGATTGCGATGATGAATTGGAGAGTTCCGGCGAAGGGGAATGAGATTGATATCAAGGATAGTTTGAGATTGTGGGCGCAGACTGTTG CATCGACTGTTAGATAA
AA sequence Show only first row Show all	>Lus10007299 pacid=23142467 polypeptide=Lus10007299 locus=Lus10007299.g ID=Lus10007299.BGIv1.0 annot-version=v1.0 MDASDFTHLYDSTWFFGATMQKKTLNTRRRSLSTSDSPPDSPTLAGMYLQLQKQQQQKSPMLRSVSEDYLFSKSGEASPDSVLCTILSGTEFTESAEDLT VVSSPPLPPKSKSKAAAARRRRAKKESGGPASKSMSSLEFEELKGFMDLGFVFSEKDKESSLVSILPGLQRLGKNEVEEEEQVAVARPYLSEAWAVQEEE KRKKKIAMMNWRVPAKGNEIDIKDSLRLWAQTVASTVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42760			unknown protein		Lus10007299 [exp]	0	1
AT5G51190	AP2_ERF		Integrase-type DNA-binding sup...		Lus10032499 [exp]	1.4	0.8690
AT5G51190	AP2_ERF		Integrase-type DNA-binding sup...		Lus10042996 [exp]	6.6	0.8369
AT1G72470		ATEXO70D1	exocyst subunit exo70 family p...		Lus10013163 [exp]	10.2	0.8163
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10009631 [exp]	11.6	0.7658
AT5G65520			Tetratricopeptide repeat (TPR)...		Lus10012031 [exp]	13.8	0.7769
					Lus10001257 [exp]	14.2	0.7852
AT2G31730	bHLH		basic helix-loop-helix (bHLH) ...		Lus10024071 [exp]	17.4	0.8006
AT3G47300		SELT	SELT-like protein precursor (....		Lus10040658 [exp]	19.3	0.7887
AT1G01550		BPS1	BYPASS 1, Protein of unknown f...		Lus10005326 [exp]	21.4	0.7752
AT5G42440			Protein kinase superfamily pro...		Lus10015344 [exp]	23.8	0.7473

Compare expression of checked genes

Lus10007299 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.