Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54860 174 / 9e-50 ATVPS33 VACUOLAR PROTEIN SORTING 33, Sec1/munc18-like (SM) proteins superfamily (.1), Sec1/munc18-like (SM) proteins superfamily (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037969 [exp] 224 / 2e-69 AT3G54860 650 / 0.0 VACUOLAR PROTEIN SORTING 33, Sec1/munc18-like (SM) proteins superfamily (.1), Sec1/munc18-like (SM) proteins superfamily (.2) Lus10038698 [exp] 223 / 2e-68 AT3G54860 654 / 0.0 VACUOLAR PROTEIN SORTING 33, Sec1/munc18-like (SM) proteins superfamily (.1), Sec1/munc18-like (SM) proteins superfamily (.2) Lus10002776 [exp] 44 / 9e-05 AT3G54860 102 / 3e-25 VACUOLAR PROTEIN SORTING 33, Sec1/munc18-like (SM) proteins superfamily (.1), Sec1/munc18-like (SM) proteins superfamily (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G226600 [exp] 192 / 1e-56 AT3G54860 929 / 0.0 VACUOLAR PROTEIN SORTING 33, Sec1/munc18-like (SM) proteins superfamily (.1), Sec1/munc18-like (SM) proteins superfamily (.2) Potri.008G035600 [exp] 178 / 4e-51 AT3G54860 968 / 0.0 VACUOLAR PROTEIN SORTING 33, Sec1/munc18-like (SM) proteins superfamily (.1), Sec1/munc18-like (SM) proteins superfamily (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00995 [flax] [poplar] Sec1 Sec1 family
Representative CDS sequence Show only first row Show all	>Lus10007300 pacid=23142446 polypeptide=Lus10007300 locus=Lus10007300.g ID=Lus10007300.BGIv1.0 annot-version=v1.0 ATGATTGATCGACGGACTGCGTTGACAGTGGTAGCTAGCGGCAGTGAGAGTACATCTTTCTGCGACAATTCCCTCTGCCTTTTCTCTATCAGAGAGCAGT CCCAGAGAGAGCTCGTCAACATTCTTCAAATGTGCATGATGATATATCTAAAGGACTTCAGAGAGACACTCGAGGAAGAAAAAGTTCATCACTTGATGAC CATAGGGGAATATCCATTATACATGGTTCCATTTGATGAGGATGTGATATCATTTGAACTCGATGGTGCAAACAAAGATTTCCAAGTCGATGGTAACACG AGTTCACTTTGGCATATAGCCAAGGCAATTCATAAGCTTGAGTTCTTAAATTACAGTGACAAGTTGTTCAAAGAAACTCGTGATCTCAACTTTGAAGTTG TTGTCCAGGTTCTCCGCCAAAAAGCAACCTCCATGAAGGAGGATTATGCAGAGATGACAACAACCGATCAAACAGTTTCTGAATTGAAAGACTTTTTCAA GAAGCTCAACTCATTGCCAGAAATGACCCAGTTGACAACGTTCACATCTAAGCAGTCTTTTCTTTCACGACTTAACATGCTACTTCCACGTAATTATATC CCTTACTTTGGCGGGCGAGAAGTACGGCATAGTTATGGATTTGAACAAAAAGCAACCTTGAACAATCTAGAAATGGCTGGATTGCTTAAAAAGCAGGAAC CAAGGAGCAATTGGCTAACTATTAAGCGTGTTTTGCAACTTGTCGTTGAAGATACTGACACTGCCAAAAGTGCCTCGACACTGTTGCCTGAACCTCACTC GGCGATAAAGAGGGGTGGAGGATTCCCACACAGTGCATCTTTCGAATCAATGTCCACAGCTTTCGGAAGCTCATCTACTTCTGAGGAGCTTCTAGATGCA GTTGATGCTCGAGGGTTTTCCAGCCGTTTGTATGGAAGGATTGAAGCTCTTAAAGGATGA
AA sequence Show only first row Show all	>Lus10007300 pacid=23142446 polypeptide=Lus10007300 locus=Lus10007300.g ID=Lus10007300.BGIv1.0 annot-version=v1.0 MIDRRTALTVVASGSESTSFCDNSLCLFSIREQSQRELVNILQMCMMIYLKDFRETLEEEKVHHLMTIGEYPLYMVPFDEDVISFELDGANKDFQVDGNT SSLWHIAKAIHKLEFLNYSDKLFKETRDLNFEVVVQVLRQKATSMKEDYAEMTTTDQTVSELKDFFKKLNSLPEMTQLTTFTSKQSFLSRLNMLLPRNYI PYFGGREVRHSYGFEQKATLNNLEMAGLLKKQEPRSNWLTIKRVLQLVVEDTDTAKSASTLLPEPHSAIKRGGGFPHSASFESMSTAFGSSSTSEELLDA VDARGFSSRLYGRIEALKG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54860		ATVPS33	VACUOLAR PROTEIN SORTING 33, S...		Lus10007300 [exp]	0	1
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10013076 [exp]	1.4	0.8377
AT1G60400			F-box/RNI-like superfamily pro...		Lus10023039 [exp]	1.4	0.8223
AT4G10180		FUS2, DET1, ATD...	FUSCA 2, DE-ETIOLATED 1, light...		Lus10042983 [exp]	5.5	0.7775
AT3G52270			Transcription initiation facto...		Lus10040384 [exp]	5.7	0.7549
AT4G32790			Exostosin family protein (.1)		Lus10043238 [exp]	8.7	0.7980
AT4G29170		ATMND1	Mnd1 family protein (.1.2)		Lus10002503 [exp]	9.4	0.7734
AT4G03090			sequence-specific DNA binding;...		Lus10024746 [exp]	9.4	0.7864
AT4G35740		ATRECQ3, RECQL3	A. THALIANA RECQ HELICASE 3, D...		Lus10028387 [exp]	9.5	0.7735
AT1G16570			UDP-Glycosyltransferase superf...		Lus10031569 [exp]	14.4	0.7630
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10011954 [exp]	14.8	0.7704

Compare expression of checked genes

Lus10007300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.