Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003349 [exp] 229 / 2e-70 AT1G46912 48 / 2e-05 F-box associated ubiquitination effector family protein (.1.2) Lus10013987 [exp] 218 / 2e-65 AT3G23950 59 / 1e-08 F-box family protein (.1) Lus10013907 [exp] 125 / 2e-33 ND / Lus10013986 [exp] 111 / 2e-27 ND 55 / 7e-08 Lus10002600 [exp] 100 / 9e-24 AT3G14770 62 / 1e-10 Nodulin MtN3 family protein (.1) Lus10040816 [exp] 94 / 1e-21 ND / Lus10011965 [exp] 87 / 3e-21 ND / Lus10018225 [exp] 86 / 2e-20 ND / Lus10040838 [exp] 78 / 4e-16 AT3G23950 57 / 2e-08 F-box family protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007301 pacid=23142450 polypeptide=Lus10007301 locus=Lus10007301.g ID=Lus10007301.BGIv1.0 annot-version=v1.0 ATGGAATCAGCCTTTTACGAGGACTATATTGAATGTGTCACTGAAGAGGCAACTCGGGACTTGGTGGCTGAAATCATTCAGCGGAGGAAGAAGAAAATCC GCAATGAGATTGTTATAAGAGACAGGCAGCTGACTCGTTTCCCATTTGACAAGGAATTGGATGGACTAAAAACTATTTTGACAGACATTGAAGCTGAAGT GGGCGCTATTGCCAAATGGAAAGAAGAACTGAAGCAGAGGCTTCTAAGCAAAACTCCGGCAGAGTTTCCTTACCCTCCAGTCTCTATCAAAAGTGTCAGT ACTAGGAACATGGTGGTTCCGAGTAGGAAGCGCAAAATGGGCGGGATTGTTATAAGAGAAAGGAAGCAGCCTTGTTTTCCTGATGACAAGGAAGCCGGTA TGGTTACTCTTGGCAAAAGGAAAGAAGGACTGAAGCAGAGACGTGTTTGCCAAACGTCGGCAGAGCTTTTTTATCCTCCAGTCTCTATGGAAAGTGTCTC TATGGAAGTAACTACTACGAACATGGTGGTTCCGAGTAGGAAGCGCAAAATTGGCGGAGGGATGGTTATAAGAGAAAGGAAGCAGCCTCGTTTTCTTCAT GACAAGGAGGAATTGGCGGATTTGAAAGATGTTGAATCCTATATGGCCGCTATTGGCAACCCGAAAGACGTGAAGCAGGGAGTTTATTGTGAAACGTCGG CAGAGCTTCCTCATCCTCTAGGGCTCCCAAGGTTTGATGATCTTGATACGAGAAGTATAAGTATCGAGGACCGGGAAAAAAGAATGCTTGCTATTTTACA GGAAATAACGGATCAATGA
AA sequence Show only first row Show all	>Lus10007301 pacid=23142450 polypeptide=Lus10007301 locus=Lus10007301.g ID=Lus10007301.BGIv1.0 annot-version=v1.0 MESAFYEDYIECVTEEATRDLVAEIIQRRKKKIRNEIVIRDRQLTRFPFDKELDGLKTILTDIEAEVGAIAKWKEELKQRLLSKTPAEFPYPPVSIKSVS TRNMVVPSRKRKMGGIVIRERKQPCFPDDKEAGMVTLGKRKEGLKQRRVCQTSAELFYPPVSMESVSMEVTTTNMVVPSRKRKIGGGMVIRERKQPRFLH DKEELADLKDVESYMAAIGNPKDVKQGVYCETSAELPHPLGLPRFDDLDTRSISIEDREKRMLAILQEITDQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10007301 [exp]	0	1
AT5G39360		EDL2	EID1-like 2 (.1)		Lus10018196 [exp]	3.2	0.8652
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10036203 [exp]	5.5	0.8571
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10003772 [exp]	6.3	0.8581
AT4G34370		ATARI1	ARABIDOPSIS ARIADNE 1, ARIADNE...		Lus10011309 [exp]	8.8	0.8561
AT5G26990			Drought-responsive family prot...		Lus10015214 [exp]	9.5	0.8528
AT5G55560			Protein kinase superfamily pro...		Lus10001739 [exp]	10.5	0.8516
AT1G71696		SOL1.4, SOL1.3,...	SUPPRESSOR OF LLP1 1, carboxyp...		Lus10028730 [exp]	15.6	0.8302
AT1G52740		HTA9	histone H2A protein 9 (.1)		Lus10043301 [exp]	17.9	0.8494
AT1G13740		AFP2	ABI five binding protein 2 (.1...		Lus10037084 [exp]	19.2	0.8554
AT1G55160			unknown protein		Lus10019322 [exp]	19.6	0.8595

Compare expression of checked genes

Lus10007301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.