Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22430 49 / 3e-06 F-box family protein (.1) AT1G51290 46 / 4e-05 F-box and associated interaction domains-containing protein (.1) AT3G23950 46 / 4e-05 F-box family protein (.1) AT5G52610 43 / 0.0004 F-box and associated interaction domains-containing protein (.1) AT5G07610 43 / 0.0004 F-box family protein (.1) AT1G51320 42 / 0.0006 F-box and associated interaction domains-containing protein (.1) AT2G40910 42 / 0.0006 F-box and associated interaction domains-containing protein (.1.2) AT1G11620 42 / 0.0007 F-box and associated interaction domains-containing protein (.1) AT3G28223 42 / 0.0008 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013987 [exp] 701 / 0 AT3G23950 59 / 1e-08 F-box family protein (.1) Lus10013986 [exp] 676 / 0 ND 55 / 7e-08 Lus10007303 [exp] 666 / 0 AT3G23950 45 / 6e-05 F-box family protein (.1) Lus10003349 [exp] 662 / 0 AT1G46912 48 / 2e-05 F-box associated ubiquitination effector family protein (.1.2) Lus10040838 [exp] 643 / 0 AT3G23950 57 / 2e-08 F-box family protein (.1) Lus10040816 [exp] 473 / 1e-164 ND / Lus10016522 [exp] 473 / 3e-161 AT2G37890 155 / 6e-42 Mitochondrial substrate carrier family protein (.1) Lus10013907 [exp] 444 / 2e-154 ND / Lus10004929 [exp] 405 / 2e-139 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G004800 [exp] 119 / 2e-29 AT5G49610 65 / 3e-11 F-box family protein (.1) Potri.011G000700 [exp] 103 / 1e-23 AT3G15910 58 / 5e-09 unknown protein Potri.009G132400 [exp] 85 / 1e-17 ND / Potri.005G043500 [exp] 60 / 2e-09 AT5G07610 135 / 7e-36 F-box family protein (.1) Potri.013G067800 [exp] 57 / 1e-08 AT5G07610 131 / 4e-34 F-box family protein (.1) Potri.003G215900 [exp] 49 / 6e-06 AT5G07610 101 / 2e-23 F-box family protein (.1) Potri.004G000900 [exp] 48 / 1e-05 AT4G12560 87 / 2e-18 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.008G016300 [exp] 44 / 5e-05 AT5G07610 53 / 2e-08 F-box family protein (.1) Potri.013G110300 [exp] 43 / 0.0003 AT5G07610 54 / 7e-08 F-box family protein (.1) Potri.013G109900 [exp] 42 / 0.0009 AT5G07610 61 / 7e-10 F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007302 pacid=23142451 polypeptide=Lus10007302 locus=Lus10007302.g ID=Lus10007302.BGIv1.0 annot-version=v1.0 ATGGCGATCGAGAGCTGCATCTCCGATTGGGATGTGCCGCTAACCAAACTCCGTCGCTGTTCCGGAAAGCGACAACGAATCAGTTCAGAAGCAAACATGA CGATCAGCGAATTAGGAACCGATCTTCTCGTACAGATTCTGATCCGCCTCCCCAACCCTAGATCCAGCTACCAGTGTAAACTCGTCTGCAAGCGGTGGCG CTCCCTGATCTCCAGTCCTCGCTTCAACCGCCGTTTCGTTTCTCACCATCTGACCAGGAACCATCCACATATGCCGCTGGATCCATACGAGCTGAAATCG ATCATCCTCAGCTTTCTCCCTCCCATGCCTAGTTCAGTTGGAGACGCTCTCAGAGTTTTGGATTGCAGCAAGGACTTGGTTTTATGCGGGTTTTGGGATG TAGATTGCGACGATGGGGAGCGTTGCAGATCGTACTTGGTCTGCAATCCATTTACGAAGCAGTGGATGGCTCTTCCTTTAGCGCCTAGGAAGCATGTGGG TTATATGTCAACGGCCGCAAGGTTAGTTTGTGAATCCCGGAATTCTAATAAGCTTGATTTAGGTGGAGATGACCAAGAAGCAGCATTTTATTCCGAGTAT CGCTTCCGTGTGGTTTGTATTTATCAAGTCGATCGACCAAATGTGGCAATAAACCTAGACCTTTTTTGTTCGGAGTCTGGAGAATGGATCAAGGAAGCTG TTGTCTGCGATCGTCATTATATATTTGGAATAAAAGGTATAATTTCGTGCAATGGGAAGTTGTTTTGGAAGTATAAAAGTGTGTATAGTCAGCCTACGAG TTTGGATTTGGTGGCTGTGTTTAATCCTTTCCGCCTTGATATGCCTCCCACTTCCATTGATGTTTCTCCATTCCTTGTGTATCCAAATTGGTTTATTTCC GCCTCACAAGGGGTGTTGCATGTAATTGCAATGGAAAATAAAACTGTACCTGTTCGTTCAAGCATATGGAGACTCGAAGAAGACGGTAAATCTTGGAGGA AACAATATGAGGGGTTGGTGAACGAGACATCAAAGTGTTGTAACTATGATGTTGAGGCCTGTTATCGACCCTTACTGCATGCACATAATCCGGAAATCAT TTTCTTCAATCCGGTTTGTTCTGAAGAAAAGAATGCTATATTGTCCTGTGATTTGAGAACAGGAGAGCTAGAGTTCTTCGCCAAAGTAGAAGGGAAGCCT GATGTCTATCAGCTTCAGGTGTTCCAGCCAAGGGTTTCTTGCTGGGCTACACCAATTCCAAGGTATGATGAGTTGCGAGGCATGTACGATGGAAGCTACA GCTTTTGGGTTCAGAGCGGTAGTGAATCAAAAACACACTCCCTGCCTCCCTCCCTCAATGTTTGGTGA
AA sequence Show only first row Show all	>Lus10007302 pacid=23142451 polypeptide=Lus10007302 locus=Lus10007302.g ID=Lus10007302.BGIv1.0 annot-version=v1.0 MAIESCISDWDVPLTKLRRCSGKRQRISSEANMTISELGTDLLVQILIRLPNPRSSYQCKLVCKRWRSLISSPRFNRRFVSHHLTRNHPHMPLDPYELKS IILSFLPPMPSSVGDALRVLDCSKDLVLCGFWDVDCDDGERCRSYLVCNPFTKQWMALPLAPRKHVGYMSTAARLVCESRNSNKLDLGGDDQEAAFYSEY RFRVVCIYQVDRPNVAINLDLFCSESGEWIKEAVVCDRHYIFGIKGIISCNGKLFWKYKSVYSQPTSLDLVAVFNPFRLDMPPTSIDVSPFLVYPNWFIS ASQGVLHVIAMENKTVPVRSSIWRLEEDGKSWRKQYEGLVNETSKCCNYDVEACYRPLLHAHNPEIIFFNPVCSEEKNAILSCDLRTGELEFFAKVEGKP DVYQLQVFQPRVSCWATPIPRYDELRGMYDGSYSFWVQSGSESKTHSLPPSLNVW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15680			F-box family protein (.1)		Lus10007302 [exp]	0	1
AT2G20190		ATCLASP	CLIP-associated protein (.1)		Lus10022839 [exp]	4.0	0.8933
AT4G30790			unknown protein		Lus10007700 [exp]	4.9	0.8440
AT3G23950			F-box family protein (.1)		Lus10007303 [exp]	7.5	0.8484
AT4G24200			Transcription elongation facto...		Lus10028515 [exp]	8.1	0.8558
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Lus10019610 [exp]	8.9	0.7865
AT5G56250		HAP8	hapless 8 (.1.2)		Lus10027098 [exp]	9.5	0.8597
AT5G06560			Protein of unknown function, D...		Lus10015990 [exp]	10.1	0.8161
AT3G19190		ATATG2	autophagy 2 (.1)		Lus10019868 [exp]	10.2	0.8677
					Lus10001309 [exp]	12.2	0.8576
AT1G06410		ATTPSA, ATTPS7	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10029258 [exp]	14.7	0.8258

Compare expression of checked genes

Lus10007302 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.