Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23950 44 / 9e-05 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007302 [exp] 667 / 0 AT1G15680 49 / 4e-06 F-box family protein (.1) Lus10013986 [exp] 514 / 0 ND 55 / 7e-08 Lus10040838 [exp] 512 / 0 AT3G23950 57 / 2e-08 F-box family protein (.1) Lus10013987 [exp] 514 / 5e-178 AT3G23950 59 / 1e-08 F-box family protein (.1) Lus10003349 [exp] 507 / 6e-177 AT1G46912 48 / 2e-05 F-box associated ubiquitination effector family protein (.1.2) Lus10013907 [exp] 429 / 2e-150 ND / Lus10004929 [exp] 401 / 2e-139 ND / Lus10040816 [exp] 357 / 3e-121 ND / Lus10016522 [exp] 289 / 9e-92 AT2G37890 155 / 6e-42 Mitochondrial substrate carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G004800 [exp] 73 / 5e-14 AT5G49610 65 / 3e-11 F-box family protein (.1) Potri.011G000700 [exp] 68 / 2e-12 AT3G15910 58 / 5e-09 unknown protein Potri.009G132400 [exp] 63 / 7e-11 ND / Potri.013G110300 [exp] 41 / 0.001 AT5G07610 54 / 7e-08 F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007303 pacid=23142473 polypeptide=Lus10007303 locus=Lus10007303.g ID=Lus10007303.BGIv1.0 annot-version=v1.0 ATGCATAGTGCGACTCGAGACGGTCTCAGAGTGTTGGATTGCAACAATGACTTGGTTCTATGCGGGTTTTGGGATATCGGTTGCGAGGATGGGGAACGTA GCAGAATGTACTTGGTCTGCAATCCATTTACGAAGCAGTGGATGGCTCTTCCTTTAGCGCCTAGGAAGCATGTGAGTTATATCGCAACGGCCGCAAGGTT AGTTTGTGAATCCCGGAATTCTAATAAGCTTGATTTAGGTGGAGATGACCAAGAAGCAGCATTTTATTCCGAGTATCGCTTCCGTGTGGTTTATATTTAT CAAGTCGATCGACCAAATGTGGCAATAAACCTAGACCTTTTTTGTTCGGAGTCTGGAGAATGGATCAAGGAAGCTGTTGTCTGCGATCGTCATTATATAT TTGGAATAAAAGGTATAATTTCGTGCAATGGGAAGTTGTTTTGGAAGTATAAAAGTGTGTATAGTCAGCCTACGAGTTTGGATTTGGTGGCTGTGTTTAA TCCTTTCCGCCTTGATATGCCTCCCACTTCCATTGATGTTTCTCCATTCCTTGTGTATCCAAATTGGTTTATTTCCGCCTCACAAGGGGTGTTGCATGTA ATTGCAATGGAAAATAAAACTGTACCTGTTCGTTCAAGCATATGGAGACTCGAAGAAGACGGTAAATCTTGGAGGAAACAATATGAGGGGTTGGTGAACG AGACATCAAAGTGTTGTAACTATGATGTTGAGGCCTGTTATCGACCCTTACTGCATGCACATAATCCGGAAATCATTTTCTTCAATCCGGTTTGTTCTGA AGAAAAGAATGCTATATTGTCCTGTGATTTGAGAACAGGAGAGCTAGAGTTCTTCGCCAAAGTAGAAGGGAAGCCTGATGTCTATCAGCTTCAGGTGTTC CAGCCAAGGGTTTCCTGCTGGGCTACTCCAATTCCAAGGTATGAGGAATTGCGAGGCATGTATGATGGAAGCTACAGCTTTTGGGTTCAGAGCAGCAGTG AAGTAAAAACAGACTTCCTGCTCAAAAATTAG
AA sequence Show only first row Show all	>Lus10007303 pacid=23142473 polypeptide=Lus10007303 locus=Lus10007303.g ID=Lus10007303.BGIv1.0 annot-version=v1.0 MHSATRDGLRVLDCNNDLVLCGFWDIGCEDGERSRMYLVCNPFTKQWMALPLAPRKHVSYIATAARLVCESRNSNKLDLGGDDQEAAFYSEYRFRVVYIY QVDRPNVAINLDLFCSESGEWIKEAVVCDRHYIFGIKGIISCNGKLFWKYKSVYSQPTSLDLVAVFNPFRLDMPPTSIDVSPFLVYPNWFISASQGVLHV IAMENKTVPVRSSIWRLEEDGKSWRKQYEGLVNETSKCCNYDVEACYRPLLHAHNPEIIFFNPVCSEEKNAILSCDLRTGELEFFAKVEGKPDVYQLQVF QPRVSCWATPIPRYEELRGMYDGSYSFWVQSSSEVKTDFLLKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23950			F-box family protein (.1)		Lus10007303 [exp]	0	1
AT5G52530			dentin sialophosphoprotein-rel...		Lus10038838 [exp]	1.0	0.9110
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Lus10002014 [exp]	2.4	0.8701
AT4G24200			Transcription elongation facto...		Lus10028515 [exp]	3.2	0.8763
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10039926 [exp]	4.9	0.8622
AT1G50600	GRAS	SCL5	scarecrow-like 5 (.1)		Lus10003773 [exp]	7.2	0.8369
AT4G01000			Ubiquitin-like superfamily pro...		Lus10010125 [exp]	7.5	0.8500
AT1G15680			F-box family protein (.1)		Lus10007302 [exp]	7.5	0.8484
AT2G40860			protein kinase family protein ...		Lus10024475 [exp]	7.9	0.7798
AT5G47360			Tetratricopeptide repeat (TPR)...		Lus10019160 [exp]	12.6	0.8202
AT1G76320	FAR1_related	FRS4	FAR1-related sequence 4 (.1.2)		Lus10031825 [exp]	12.8	0.8433

Compare expression of checked genes

Lus10007303 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.